Update docker_v2/fidle_env_test.py, docker_v2/fidle_python_pip.dockerfile,...

Update docker_v2/fidle_env_test.py, docker_v2/fidle_python_pip.dockerfile, docker_v2/jupyter_lab_config.py, docker_v2/notebook.json, docker_v2/requirements-cpu.txt, docker_v2/requirements.txt, docker/jupyter_lab_config.py, docker/notebook.json, docker/requirements_packages.txt, docker/Dockerfile, docker/images/env-fidle.svg, docker/images/env-fidle.png

docker/Dockerfile

+# base image
+ARG PYTHON_VERSION=3.7
+ARG docker_image_base=python:${PYTHON_VERSION}-slim
+FROM ${docker_image_base}
+
+# maintainers
+LABEL maintainer1=soraya.arias@inria.fr maintainer2=achille.mbogol-touye@grenoble-inp.fr
+
+# Ensure a sane environment
+ENV TZ=Europe/Paris LANG=C.UTF-8 LC_ALL=C.UTF-8 DEBIAN_FRONTEND=noninteractive
+RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone && \
+    apt update --fix-missing && \
+    apt install -y --no-install-recommends apt-utils vim \
+        python3-venv  \
+        python3-pip && \
+    apt -y dist-upgrade && \
+    apt clean && \
+    rm -fr /var/lib/apt/lists/*  
+   
+# copy Python requirement packages list in docker image
+COPY requirements_packages.txt /root/requirements_packages.txt
+
+# Update Python tools and install requirements packages
+RUN python3 -m pip install --upgrade pip && \
+    pip install --no-cache-dir -r /root/requirements_packages.txt
+
+ 
+RUN bin/rm /usr/local/share/jupyter/kernels/python3/logo*      
+    
+# Change default logo and name kernels
+COPY images/env-fidle.png /usr/local/share/jupyter/kernels/python3/logo-64x64.png
+COPY images/env-fidle.svg /usr/local/share/jupyter/kernels/python3/logo-svg.svg
+
+
+# Get Fidle datasets
+RUN mkdir /data && \
+    fid  install_datasets --datasets datasets-fidle-v2.0 --install_dir /data
+
+# Get Fidle notebooks
+RUN mkdir /notebooks/ && \
+    fid install_notebooks --quiet --install_dir /notebooks
+
+# Add Jupyter configuration (no browser, listen all interfaces, ...)
+COPY jupyter_lab_config.py /root/.jupyter/jupyter_lab_config.py
+COPY notebook.json /root/.jupyter/nbconfig/notebook.json
+
+# Jupyter notebook uses 8888 
+EXPOSE 8888
+
+VOLUME /notebooks
+WORKDIR /notebooks
+
+# Set a folder in the volume as Python Path
+ENV PYTHONPATH=/notebooks/fidle-master/:$PYTHONPATH
+
+# Force bash as the default shell (useful in the notebooks)
+ENV SHELL=/bin/bash
+
+# Set Fidle dataset directory variable
+ENV FIDLE_DATASETS_DIR=/data/datasets-fidle
+
+# Run a notebook by default
+CMD ["jupyter", "lab"]

docker/images/env-fidle.svg

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+  <defs>
+    <style>
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+        fill: #fff;
+      }
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docker/jupyter_lab_config.py

@@ -902,7 +902,6 @@ c.ServerApp.quit_button = True
 #  Default: ''
 c.ServerApp.root_dir = '/notebooks/fidle-master'
 
-
 ## The session manager class to use.
 #  Default: 'jupyter_server.services.sessions.sessionmanager.SessionManager'
 # c.ServerApp.session_manager_class = 'jupyter_server.services.sessions.sessionmanager.SessionManager'

docker/requirements_packages.txt

+# ----------------------------------------------------
+#    ______ _     _ _       __      __             
+#   |  ____(_)   | | |      \ \    / /             
+#   | |__   _  __| | | ___   \ \  / /__ _ ____   __
+#   |  __| | |/ _` | |/ _ \   \ \/ / _ \ '_ \ \ / /
+#   | |    | | (_| | |  __/    \  /  __/ | | \ V / 
+#   |_|    |_|\__,_|_|\___|     \/ \___|_| |_|\_/  
+#                               Fidle pip virtual env
+# ----------------------------------------------------
+#
+# To install your Fidle env, see https://fidle.cnrs.fr/installation
+
+torch
+torchvision
+torch-geometric
+lightning
+-f https://download.pytorch.org/whl/cpu
+tensorflow_cpu>=2.7
+keras
+numpy
+pandas
+jupyterlab
+scikit-image
+scikit-learn
+matplotlib
+plotly
+barviz
+opencv-python
+fidle

docker_v2/notebook.json

+{
+  "load_extensions": {
+    "execute_time/ExecuteTime": true,
+    "tree-filter/index": true
+  }
+}