From f7a1968dcd37a2e8991bb508ac92b1617762535e Mon Sep 17 00:00:00 2001
From: Achille Mbogol Touye <achille.mbogol-touye@univ-grenoble-alpes.fr>
Date: Thu, 13 Apr 2023 13:16:36 +0200
Subject: [PATCH] Update docker_v2/fidle_env_test.py,
docker_v2/fidle_python_pip.dockerfile, docker_v2/jupyter_lab_config.py,
docker_v2/notebook.json, docker_v2/requirements-cpu.txt,
docker_v2/requirements.txt, docker/jupyter_lab_config.py,
docker/notebook.json, docker/requirements_packages.txt, docker/Dockerfile,
docker/images/env-fidle.svg, docker/images/env-fidle.png
---
docker/Dockerfile | 63 +
docker/images/env-fidle.png | Bin 0 -> 2262 bytes
docker/images/env-fidle.svg | 86 ++
docker/jupyter_lab_config.py | 1 -
docker/requirements_packages.txt | 29 +
{docker => docker_v2}/fidle_env_test.py | 0
.../fidle_python_pip.dockerfile | 0
docker_v2/jupyter_lab_config.py | 1019 +++++++++++++++++
docker_v2/notebook.json | 6 +
{docker => docker_v2}/requirements-cpu.txt | 0
{docker => docker_v2}/requirements.txt | 0
11 files changed, 1203 insertions(+), 1 deletion(-)
create mode 100644 docker/Dockerfile
create mode 100644 docker/images/env-fidle.png
create mode 100644 docker/images/env-fidle.svg
create mode 100644 docker/requirements_packages.txt
rename {docker => docker_v2}/fidle_env_test.py (100%)
rename {docker => docker_v2}/fidle_python_pip.dockerfile (100%)
create mode 100644 docker_v2/jupyter_lab_config.py
create mode 100644 docker_v2/notebook.json
rename {docker => docker_v2}/requirements-cpu.txt (100%)
rename {docker => docker_v2}/requirements.txt (100%)
diff --git a/docker/Dockerfile b/docker/Dockerfile
new file mode 100644
index 0000000..a4a8913
--- /dev/null
+++ b/docker/Dockerfile
@@ -0,0 +1,63 @@
+# base image
+ARG PYTHON_VERSION=3.7
+ARG docker_image_base=python:${PYTHON_VERSION}-slim
+FROM ${docker_image_base}
+
+# maintainers
+LABEL maintainer1=soraya.arias@inria.fr maintainer2=achille.mbogol-touye@grenoble-inp.fr
+
+# Ensure a sane environment
+ENV TZ=Europe/Paris LANG=C.UTF-8 LC_ALL=C.UTF-8 DEBIAN_FRONTEND=noninteractive
+RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone && \
+ apt update --fix-missing && \
+ apt install -y --no-install-recommends apt-utils vim \
+ python3-venv \
+ python3-pip && \
+ apt -y dist-upgrade && \
+ apt clean && \
+ rm -fr /var/lib/apt/lists/*
+
+# copy Python requirement packages list in docker image
+COPY requirements_packages.txt /root/requirements_packages.txt
+
+# Update Python tools and install requirements packages
+RUN python3 -m pip install --upgrade pip && \
+ pip install --no-cache-dir -r /root/requirements_packages.txt
+
+
+RUN bin/rm /usr/local/share/jupyter/kernels/python3/logo*
+
+# Change default logo and name kernels
+COPY images/env-fidle.png /usr/local/share/jupyter/kernels/python3/logo-64x64.png
+COPY images/env-fidle.svg /usr/local/share/jupyter/kernels/python3/logo-svg.svg
+
+
+# Get Fidle datasets
+RUN mkdir /data && \
+ fid install_datasets --datasets datasets-fidle-v2.0 --install_dir /data
+
+# Get Fidle notebooks
+RUN mkdir /notebooks/ && \
+ fid install_notebooks --quiet --install_dir /notebooks
+
+# Add Jupyter configuration (no browser, listen all interfaces, ...)
+COPY jupyter_lab_config.py /root/.jupyter/jupyter_lab_config.py
+COPY notebook.json /root/.jupyter/nbconfig/notebook.json
+
+# Jupyter notebook uses 8888
+EXPOSE 8888
+
+VOLUME /notebooks
+WORKDIR /notebooks
+
+# Set a folder in the volume as Python Path
+ENV PYTHONPATH=/notebooks/fidle-master/:$PYTHONPATH
+
+# Force bash as the default shell (useful in the notebooks)
+ENV SHELL=/bin/bash
+
+# Set Fidle dataset directory variable
+ENV FIDLE_DATASETS_DIR=/data/datasets-fidle
+
+# Run a notebook by default
+CMD ["jupyter", "lab"]
diff --git a/docker/images/env-fidle.png b/docker/images/env-fidle.png
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diff --git a/docker/images/env-fidle.svg b/docker/images/env-fidle.svg
new file mode 100644
index 0000000..9f3f0b9
--- /dev/null
+++ b/docker/images/env-fidle.svg
@@ -0,0 +1,86 @@
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+ }
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+ fill: url(#h);
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+ fill: #ee4c2c;
+ }
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+ fill: url(#j);
+ }
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diff --git a/docker/jupyter_lab_config.py b/docker/jupyter_lab_config.py
index 672a655..dcc8405 100644
--- a/docker/jupyter_lab_config.py
+++ b/docker/jupyter_lab_config.py
@@ -902,7 +902,6 @@ c.ServerApp.quit_button = True
# Default: ''
c.ServerApp.root_dir = '/notebooks/fidle-master'
-
## The session manager class to use.
# Default: 'jupyter_server.services.sessions.sessionmanager.SessionManager'
# c.ServerApp.session_manager_class = 'jupyter_server.services.sessions.sessionmanager.SessionManager'
diff --git a/docker/requirements_packages.txt b/docker/requirements_packages.txt
new file mode 100644
index 0000000..276ef2c
--- /dev/null
+++ b/docker/requirements_packages.txt
@@ -0,0 +1,29 @@
+# ----------------------------------------------------
+# ______ _ _ _ __ __
+# | ____(_) | | | \ \ / /
+# | |__ _ __| | | ___ \ \ / /__ _ ____ __
+# | __| | |/ _` | |/ _ \ \ \/ / _ \ '_ \ \ / /
+# | | | | (_| | | __/ \ / __/ | | \ V /
+# |_| |_|\__,_|_|\___| \/ \___|_| |_|\_/
+# Fidle pip virtual env
+# ----------------------------------------------------
+#
+# To install your Fidle env, see https://fidle.cnrs.fr/installation
+
+torch
+torchvision
+torch-geometric
+lightning
+-f https://download.pytorch.org/whl/cpu
+tensorflow_cpu>=2.7
+keras
+numpy
+pandas
+jupyterlab
+scikit-image
+scikit-learn
+matplotlib
+plotly
+barviz
+opencv-python
+fidle
diff --git a/docker/fidle_env_test.py b/docker_v2/fidle_env_test.py
similarity index 100%
rename from docker/fidle_env_test.py
rename to docker_v2/fidle_env_test.py
diff --git a/docker/fidle_python_pip.dockerfile b/docker_v2/fidle_python_pip.dockerfile
similarity index 100%
rename from docker/fidle_python_pip.dockerfile
rename to docker_v2/fidle_python_pip.dockerfile
diff --git a/docker_v2/jupyter_lab_config.py b/docker_v2/jupyter_lab_config.py
new file mode 100644
index 0000000..672a655
--- /dev/null
+++ b/docker_v2/jupyter_lab_config.py
@@ -0,0 +1,1019 @@
+# Configuration file for lab.
+
+#------------------------------------------------------------------------------
+# Application(SingletonConfigurable) configuration
+#------------------------------------------------------------------------------
+## This is an application.
+
+## Set the log level by value or name.
+# Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']
+# Default: 30
+c.Application.log_level = 'INFO'
+
+#------------------------------------------------------------------------------
+# JupyterApp(Application) configuration
+#------------------------------------------------------------------------------
+## Base class for Jupyter applications
+
+## Answer yes to any prompts.
+# Default: False
+# c.JupyterApp.answer_yes = False
+
+## Full path of a config file.
+# Default: ''
+# c.JupyterApp.config_file = ''
+
+## Specify a config file to load.
+# Default: ''
+# c.JupyterApp.config_file_name = ''
+
+## Generate default config file.
+# Default: False
+# c.JupyterApp.generate_config = False
+
+## The date format used by logging formatters for %(asctime)s
+# See also: Application.log_datefmt
+# c.JupyterApp.log_datefmt = '%Y-%m-%d %H:%M:%S'
+
+## The Logging format template
+# See also: Application.log_format
+# c.JupyterApp.log_format = '[%(name)s]%(highlevel)s %(message)s'
+
+## Set the log level by value or name.
+# See also: Application.log_level
+# c.JupyterApp.log_level = 30
+
+## Instead of starting the Application, dump configuration to stdout
+# See also: Application.show_config
+# c.JupyterApp.show_config = False
+
+## Instead of starting the Application, dump configuration to stdout (as JSON)
+# See also: Application.show_config_json
+# c.JupyterApp.show_config_json = False
+
+#------------------------------------------------------------------------------
+# ExtensionApp(JupyterApp) configuration
+#------------------------------------------------------------------------------
+## Base class for configurable Jupyter Server Extension Applications.
+#
+# ExtensionApp subclasses can be initialized two ways:
+# 1. Extension is listed as a jpserver_extension, and ServerApp calls
+# its load_jupyter_server_extension classmethod. This is the
+# classic way of loading a server extension.
+# 2. Extension is launched directly by calling its `launch_instance`
+# class method. This method can be set as a entry_point in
+# the extensions setup.py
+
+## Answer yes to any prompts.
+# See also: JupyterApp.answer_yes
+# c.ExtensionApp.answer_yes = False
+
+## Full path of a config file.
+# See also: JupyterApp.config_file
+# c.ExtensionApp.config_file = ''
+
+## Specify a config file to load.
+# See also: JupyterApp.config_file_name
+# c.ExtensionApp.config_file_name = ''
+
+# Default: ''
+# c.ExtensionApp.default_url = ''
+
+## Generate default config file.
+# See also: JupyterApp.generate_config
+# c.ExtensionApp.generate_config = False
+
+## Handlers appended to the server.
+# Default: []
+# c.ExtensionApp.handlers = []
+
+## The date format used by logging formatters for %(asctime)s
+# See also: Application.log_datefmt
+# c.ExtensionApp.log_datefmt = '%Y-%m-%d %H:%M:%S'
+
+## The Logging format template
+# See also: Application.log_format
+# c.ExtensionApp.log_format = '[%(name)s]%(highlevel)s %(message)s'
+
+## Set the log level by value or name.
+# See also: Application.log_level
+# c.ExtensionApp.log_level = 30
+
+## Whether to open in a browser after starting.
+# The specific browser used is platform dependent and
+# determined by the python standard library `webbrowser`
+# module, unless it is overridden using the --browser
+# (ServerApp.browser) configuration option.
+# Default: False
+# c.ExtensionApp.open_browser = False
+
+## Settings that will passed to the server.
+# Default: {}
+# c.ExtensionApp.settings = {}
+
+## Instead of starting the Application, dump configuration to stdout
+# See also: Application.show_config
+# c.ExtensionApp.show_config = False
+
+## Instead of starting the Application, dump configuration to stdout (as JSON)
+# See also: Application.show_config_json
+# c.ExtensionApp.show_config_json = False
+
+## paths to search for serving static files.
+#
+# This allows adding javascript/css to be available from the notebook server machine,
+# or overriding individual files in the IPython
+# Default: []
+# c.ExtensionApp.static_paths = []
+
+## Url where the static assets for the extension are served.
+# Default: ''
+# c.ExtensionApp.static_url_prefix = ''
+
+## Paths to search for serving jinja templates.
+#
+# Can be used to override templates from notebook.templates.
+# Default: []
+# c.ExtensionApp.template_paths = []
+
+#------------------------------------------------------------------------------
+# LabServerApp(ExtensionApp) configuration
+#------------------------------------------------------------------------------
+## A Lab Server Application that runs out-of-the-box
+
+## "A list of comma-separated URIs to get the allowed extensions list
+#
+# .. versionchanged:: 2.0.0
+# `LabServerApp.whitetlist_uris` renamed to `allowed_extensions_uris`
+# Default: ''
+# c.LabServerApp.allowed_extensions_uris = ''
+
+## Answer yes to any prompts.
+# See also: JupyterApp.answer_yes
+# c.LabServerApp.answer_yes = False
+
+## The application settings directory.
+# Default: ''
+# c.LabServerApp.app_settings_dir = ''
+
+## The url path for the application.
+# Default: '/lab'
+# c.LabServerApp.app_url = '/lab'
+
+## Deprecated, use `LabServerApp.blocked_extensions_uris`
+# Default: ''
+# c.LabServerApp.blacklist_uris = ''
+
+## A list of comma-separated URIs to get the blocked extensions list
+#
+# .. versionchanged:: 2.0.0
+# `LabServerApp.blacklist_uris` renamed to `blocked_extensions_uris`
+# Default: ''
+# c.LabServerApp.blocked_extensions_uris = ''
+
+## Whether to cache files on the server. This should be `True` except in dev
+# mode.
+# Default: True
+# c.LabServerApp.cache_files = True
+
+## Full path of a config file.
+# See also: JupyterApp.config_file
+# c.LabServerApp.config_file = ''
+
+## Specify a config file to load.
+# See also: JupyterApp.config_file_name
+# c.LabServerApp.config_file_name = ''
+
+## Extra paths to look for federated JupyterLab extensions
+# Default: []
+# c.LabServerApp.extra_labextensions_path = []
+
+## Generate default config file.
+# See also: JupyterApp.generate_config
+# c.LabServerApp.generate_config = False
+
+## Handlers appended to the server.
+# See also: ExtensionApp.handlers
+# c.LabServerApp.handlers = []
+
+## Options to pass to the jinja2 environment for this
+# Default: {}
+# c.LabServerApp.jinja2_options = {}
+
+## The standard paths to look in for federated JupyterLab extensions
+# Default: []
+# c.LabServerApp.labextensions_path = []
+
+## The url for federated JupyterLab extensions
+# Default: ''
+# c.LabServerApp.labextensions_url = ''
+
+## The interval delay in seconds to refresh the lists
+# Default: 3600
+# c.LabServerApp.listings_refresh_seconds = 3600
+
+## The optional kwargs to use for the listings HTTP requests as
+# described on https://2.python-requests.org/en/v2.7.0/api/#requests.request
+# Default: {}
+# c.LabServerApp.listings_request_options = {}
+
+## The listings url.
+# Default: ''
+# c.LabServerApp.listings_url = ''
+
+## The date format used by logging formatters for %(asctime)s
+# See also: Application.log_datefmt
+# c.LabServerApp.log_datefmt = '%Y-%m-%d %H:%M:%S'
+
+## The Logging format template
+# See also: Application.log_format
+# c.LabServerApp.log_format = '[%(name)s]%(highlevel)s %(message)s'
+
+## Set the log level by value or name.
+# See also: Application.log_level
+# c.LabServerApp.log_level = 30
+
+## Whether to open in a browser after starting.
+# See also: ExtensionApp.open_browser
+# c.LabServerApp.open_browser = False
+
+## The optional location of the settings schemas directory. If given, a handler
+# will be added for settings.
+# Default: ''
+# c.LabServerApp.schemas_dir = ''
+
+## Settings that will passed to the server.
+# See also: ExtensionApp.settings
+# c.LabServerApp.settings = {}
+
+## The url path of the settings handler.
+# Default: ''
+# c.LabServerApp.settings_url = ''
+
+## Instead of starting the Application, dump configuration to stdout
+# See also: Application.show_config
+# c.LabServerApp.show_config = False
+
+## Instead of starting the Application, dump configuration to stdout (as JSON)
+# See also: Application.show_config_json
+# c.LabServerApp.show_config_json = False
+
+## The optional location of local static files. If given, a static file handler
+# will be added.
+# Default: ''
+# c.LabServerApp.static_dir = ''
+
+## paths to search for serving static files.
+# See also: ExtensionApp.static_paths
+# c.LabServerApp.static_paths = []
+
+## Url where the static assets for the extension are served.
+# See also: ExtensionApp.static_url_prefix
+# c.LabServerApp.static_url_prefix = ''
+
+## Paths to search for serving jinja templates.
+# See also: ExtensionApp.template_paths
+# c.LabServerApp.template_paths = []
+
+## The application templates directory.
+# Default: ''
+# c.LabServerApp.templates_dir = ''
+
+## The optional location of the themes directory. If given, a handler will be
+# added for themes.
+# Default: ''
+# c.LabServerApp.themes_dir = ''
+
+## The theme url.
+# Default: ''
+# c.LabServerApp.themes_url = ''
+
+## The url path of the translations handler.
+# Default: ''
+# c.LabServerApp.translations_api_url = ''
+
+## The url path of the tree handler.
+# Default: ''
+# c.LabServerApp.tree_url = ''
+
+## The optional location of the user settings directory.
+# Default: ''
+# c.LabServerApp.user_settings_dir = ''
+
+## Deprecated, use `LabServerApp.allowed_extensions_uris`
+# Default: ''
+# c.LabServerApp.whitelist_uris = ''
+
+## The url path of the workspaces API.
+# Default: ''
+# c.LabServerApp.workspaces_api_url = ''
+
+## The optional location of the saved workspaces directory. If given, a handler
+# will be added for workspaces.
+# Default: ''
+# c.LabServerApp.workspaces_dir = ''
+
+#------------------------------------------------------------------------------
+# LabApp(LabServerApp) configuration
+#------------------------------------------------------------------------------
+##
+# See also: LabServerApp.allowed_extensions_uris
+# c.LabApp.allowed_extensions_uris = ''
+
+## Answer yes to any prompts.
+# See also: JupyterApp.answer_yes
+# c.LabApp.answer_yes = False
+
+## The app directory to launch JupyterLab from.
+# Default: None
+# c.LabApp.app_dir = None
+
+## The application settings directory.
+# Default: ''
+# c.LabApp.app_settings_dir = ''
+
+## The url path for the application.
+# Default: '/lab'
+# c.LabApp.app_url = '/lab'
+
+## Deprecated, use `LabServerApp.blocked_extensions_uris`
+# See also: LabServerApp.blacklist_uris
+# c.LabApp.blacklist_uris = ''
+
+##
+# See also: LabServerApp.blocked_extensions_uris
+# c.LabApp.blocked_extensions_uris = ''
+
+## Whether to cache files on the server. This should be `True` except in dev
+# mode.
+# Default: True
+# c.LabApp.cache_files = True
+
+## Whether to enable collaborative mode (experimental).
+# Default: False
+# c.LabApp.collaborative = False
+
+## Full path of a config file.
+# See also: JupyterApp.config_file
+# c.LabApp.config_file = ''
+
+## Specify a config file to load.
+# See also: JupyterApp.config_file_name
+# c.LabApp.config_file_name = ''
+
+## Whether to start the app in core mode. In this mode, JupyterLab
+# will run using the JavaScript assets that are within the installed
+# JupyterLab Python package. In core mode, third party extensions are disabled.
+# The `--dev-mode` flag is an alias to this to be used when the Python package
+# itself is installed in development mode (`pip install -e .`).
+# Default: False
+# c.LabApp.core_mode = False
+
+## The default URL to redirect to from `/`
+# Default: '/lab'
+# c.LabApp.default_url = '/lab'
+
+## Whether to start the app in dev mode. Uses the unpublished local
+# JavaScript packages in the `dev_mode` folder. In this case JupyterLab will
+# show a red stripe at the top of the page. It can only be used if JupyterLab
+# is installed as `pip install -e .`.
+# Default: False
+# c.LabApp.dev_mode = False
+
+## Whether to expose the global app instance to browser via window.jupyterlab
+# Default: False
+# c.LabApp.expose_app_in_browser = False
+
+## Whether to load prebuilt extensions in dev mode. This may be
+# useful to run and test prebuilt extensions in development installs of
+# JupyterLab. APIs in a JupyterLab development install may be
+# incompatible with published packages, so prebuilt extensions compiled
+# against published packages may not work correctly.
+# Default: False
+# c.LabApp.extensions_in_dev_mode = False
+
+## Extra paths to look for federated JupyterLab extensions
+# Default: []
+# c.LabApp.extra_labextensions_path = []
+
+## Generate default config file.
+# See also: JupyterApp.generate_config
+# c.LabApp.generate_config = False
+
+## Handlers appended to the server.
+# See also: ExtensionApp.handlers
+# c.LabApp.handlers = []
+
+## Options to pass to the jinja2 environment for this
+# Default: {}
+# c.LabApp.jinja2_options = {}
+
+## The standard paths to look in for federated JupyterLab extensions
+# Default: []
+# c.LabApp.labextensions_path = []
+
+## The url for federated JupyterLab extensions
+# Default: ''
+# c.LabApp.labextensions_url = ''
+
+## The interval delay in seconds to refresh the lists
+# See also: LabServerApp.listings_refresh_seconds
+# c.LabApp.listings_refresh_seconds = 3600
+
+## The optional kwargs to use for the listings HTTP requests as
+# described on https://2.python-requests.org/en/v2.7.0/api/#requests.request
+# See also: LabServerApp.listings_request_options
+# c.LabApp.listings_request_options = {}
+
+## The listings url.
+# Default: ''
+# c.LabApp.listings_url = ''
+
+## The date format used by logging formatters for %(asctime)s
+# See also: Application.log_datefmt
+# c.LabApp.log_datefmt = '%Y-%m-%d %H:%M:%S'
+
+## The Logging format template
+# See also: Application.log_format
+# c.LabApp.log_format = '[%(name)s]%(highlevel)s %(message)s'
+
+## Set the log level by value or name.
+# See also: Application.log_level
+# c.LabApp.log_level = 30
+
+## Whether to open in a browser after starting.
+# See also: ExtensionApp.open_browser
+# c.LabApp.open_browser = False
+
+## The override url for static lab assets, typically a CDN.
+# Default: ''
+# c.LabApp.override_static_url = ''
+
+## The override url for static lab theme assets, typically a CDN.
+# Default: ''
+# c.LabApp.override_theme_url = ''
+
+## The optional location of the settings schemas directory. If given, a handler
+# will be added for settings.
+# Default: ''
+# c.LabApp.schemas_dir = ''
+
+## Settings that will passed to the server.
+# See also: ExtensionApp.settings
+# c.LabApp.settings = {}
+
+## The url path of the settings handler.
+# Default: ''
+# c.LabApp.settings_url = ''
+
+## Instead of starting the Application, dump configuration to stdout
+# See also: Application.show_config
+# c.LabApp.show_config = False
+
+## Instead of starting the Application, dump configuration to stdout (as JSON)
+# See also: Application.show_config_json
+# c.LabApp.show_config_json = False
+
+## Splice source packages into app directory.
+# Default: False
+# c.LabApp.splice_source = False
+
+## The optional location of local static files. If given, a static file handler
+# will be added.
+# Default: ''
+# c.LabApp.static_dir = ''
+
+## paths to search for serving static files.
+# See also: ExtensionApp.static_paths
+# c.LabApp.static_paths = []
+
+## Url where the static assets for the extension are served.
+# See also: ExtensionApp.static_url_prefix
+# c.LabApp.static_url_prefix = ''
+
+## Paths to search for serving jinja templates.
+# See also: ExtensionApp.template_paths
+# c.LabApp.template_paths = []
+
+## The application templates directory.
+# Default: ''
+# c.LabApp.templates_dir = ''
+
+## The optional location of the themes directory. If given, a handler will be
+# added for themes.
+# Default: ''
+# c.LabApp.themes_dir = ''
+
+## The theme url.
+# Default: ''
+# c.LabApp.themes_url = ''
+
+## The url path of the translations handler.
+# Default: ''
+# c.LabApp.translations_api_url = ''
+
+## The url path of the tree handler.
+# Default: ''
+# c.LabApp.tree_url = ''
+
+## The directory for user settings.
+# Default: '/root/.jupyter/lab/user-settings'
+# c.LabApp.user_settings_dir = '/root/.jupyter/lab/user-settings'
+
+## Whether to serve the app in watch mode
+# Default: False
+# c.LabApp.watch = False
+
+## Deprecated, use `LabServerApp.allowed_extensions_uris`
+# See also: LabServerApp.whitelist_uris
+# c.LabApp.whitelist_uris = ''
+
+## The url path of the workspaces API.
+# Default: ''
+# c.LabApp.workspaces_api_url = ''
+
+## The directory for workspaces
+# Default: '/root/.jupyter/lab/workspaces'
+# c.LabApp.workspaces_dir = '/root/.jupyter/lab/workspaces'
+
+#------------------------------------------------------------------------------
+# ServerApp(JupyterApp) configuration
+#------------------------------------------------------------------------------
+## Set the Access-Control-Allow-Credentials: true header
+# Default: False
+# c.ServerApp.allow_credentials = False
+
+## Set the Access-Control-Allow-Origin header
+#
+# Use '*' to allow any origin to access your server.
+#
+# Takes precedence over allow_origin_pat.
+# Default: ''
+# c.ServerApp.allow_origin = ''
+
+## Use a regular expression for the Access-Control-Allow-Origin header
+#
+# Requests from an origin matching the expression will get replies with:
+#
+# Access-Control-Allow-Origin: origin
+#
+# where `origin` is the origin of the request.
+#
+# Ignored if allow_origin is set.
+# Default: ''
+# c.ServerApp.allow_origin_pat = ''
+
+## Allow password to be changed at login for the Jupyter server.
+#
+# While logging in with a token, the Jupyter server UI will give the opportunity to
+# the user to enter a new password at the same time that will replace
+# the token login mechanism.
+#
+# This can be set to false to prevent changing password from
+# the UI/API.
+# Default: True
+c.ServerApp.allow_password_change = False
+
+## Allow requests where the Host header doesn't point to a local server
+#
+# By default, requests get a 403 forbidden response if the 'Host' header
+# shows that the browser thinks it's on a non-local domain.
+# Setting this option to True disables this check.
+#
+# This protects against 'DNS rebinding' attacks, where a remote web server
+# serves you a page and then changes its DNS to send later requests to a
+# local IP, bypassing same-origin checks.
+#
+# Local IP addresses (such as 127.0.0.1 and ::1) are allowed as local,
+# along with hostnames configured in local_hostnames.
+# Default: False
+# c.ServerApp.allow_remote_access = False
+
+## Whether to allow the user to run the server as root.
+# Default: False
+c.ServerApp.allow_root = True
+
+## Answer yes to any prompts.
+# See also: JupyterApp.answer_yes
+# c.ServerApp.answer_yes = False
+
+## "
+# Require authentication to access prometheus metrics.
+# Default: True
+# c.ServerApp.authenticate_prometheus = True
+
+## Reload the webapp when changes are made to any Python src files.
+# Default: False
+# c.ServerApp.autoreload = False
+
+## The base URL for the Jupyter server.
+#
+# Leading and trailing slashes can be omitted,
+# and will automatically be added.
+# Default: '/'
+# c.ServerApp.base_url = '/'
+
+## Specify what command to use to invoke a web
+# browser when starting the server. If not specified, the
+# default browser will be determined by the `webbrowser`
+# standard library module, which allows setting of the
+# BROWSER environment variable to override it.
+# Default: ''
+# c.ServerApp.browser = ''
+
+## The full path to an SSL/TLS certificate file.
+# Default: ''
+# c.ServerApp.certfile = ''
+
+## The full path to a certificate authority certificate for SSL/TLS client
+# authentication.
+# Default: ''
+# c.ServerApp.client_ca = ''
+
+## Full path of a config file.
+# See also: JupyterApp.config_file
+# c.ServerApp.config_file = ''
+
+## Specify a config file to load.
+# See also: JupyterApp.config_file_name
+# c.ServerApp.config_file_name = ''
+
+## The config manager class to use
+# Default: 'jupyter_server.services.config.manager.ConfigManager'
+# c.ServerApp.config_manager_class = 'jupyter_server.services.config.manager.ConfigManager'
+
+## The content manager class to use.
+# Default: 'jupyter_server.services.contents.largefilemanager.LargeFileManager'
+# c.ServerApp.contents_manager_class = 'jupyter_server.services.contents.largefilemanager.LargeFileManager'
+
+## Extra keyword arguments to pass to `set_secure_cookie`. See tornado's
+# set_secure_cookie docs for details.
+# Default: {}
+# c.ServerApp.cookie_options = {}
+
+## The random bytes used to secure cookies.
+# By default this is a new random number every time you start the server.
+# Set it to a value in a config file to enable logins to persist across server sessions.
+#
+# Note: Cookie secrets should be kept private, do not share config files with
+# cookie_secret stored in plaintext (you can read the value from a file).
+# Default: b''
+# c.ServerApp.cookie_secret = b''
+
+## The file where the cookie secret is stored.
+# Default: ''
+# c.ServerApp.cookie_secret_file = ''
+
+## Override URL shown to users.
+#
+# Replace actual URL, including protocol, address, port and base URL,
+# with the given value when displaying URL to the users. Do not change
+# the actual connection URL. If authentication token is enabled, the
+# token is added to the custom URL automatically.
+#
+# This option is intended to be used when the URL to display to the user
+# cannot be determined reliably by the Jupyter server (proxified
+# or containerized setups for example).
+# Default: ''
+# c.ServerApp.custom_display_url = ''
+
+## The default URL to redirect to from `/`
+# Default: '/'
+# c.ServerApp.default_url = '/'
+
+## Disable cross-site-request-forgery protection
+#
+# Jupyter notebook 4.3.1 introduces protection from cross-site request forgeries,
+# requiring API requests to either:
+#
+# - originate from pages served by this server (validated with XSRF cookie and token), or
+# - authenticate with a token
+#
+# Some anonymous compute resources still desire the ability to run code,
+# completely without authentication.
+# These services can disable all authentication and security checks,
+# with the full knowledge of what that implies.
+# Default: False
+# c.ServerApp.disable_check_xsrf = False
+
+## handlers that should be loaded at higher priority than the default services
+# Default: []
+# c.ServerApp.extra_services = []
+
+## Extra paths to search for serving static files.
+#
+# This allows adding javascript/css to be available from the Jupyter server machine,
+# or overriding individual files in the IPython
+# Default: []
+# c.ServerApp.extra_static_paths = []
+
+## Extra paths to search for serving jinja templates.
+#
+# Can be used to override templates from jupyter_server.templates.
+# Default: []
+# c.ServerApp.extra_template_paths = []
+
+## Open the named file when the application is launched.
+# Default: ''
+# c.ServerApp.file_to_run = ''
+
+## The URL prefix where files are opened directly.
+# Default: 'notebooks'
+# c.ServerApp.file_url_prefix = 'notebooks'
+
+## Generate default config file.
+# See also: JupyterApp.generate_config
+# c.ServerApp.generate_config = False
+
+## Extra keyword arguments to pass to `get_secure_cookie`. See tornado's
+# get_secure_cookie docs for details.
+# Default: {}
+# c.ServerApp.get_secure_cookie_kwargs = {}
+
+## (bytes/sec)
+# Maximum rate at which stream output can be sent on iopub before they are
+# limited.
+# Default: 1000000
+# c.ServerApp.iopub_data_rate_limit = 1000000
+
+## (msgs/sec)
+# Maximum rate at which messages can be sent on iopub before they are
+# limited.
+# Default: 1000
+# c.ServerApp.iopub_msg_rate_limit = 1000
+
+## The IP address the Jupyter server will listen on.
+# Default: 'localhost'
+c.ServerApp.ip = '0.0.0.0'
+
+## Supply extra arguments that will be passed to Jinja environment.
+# Default: {}
+# c.ServerApp.jinja_environment_options = {}
+
+## Extra variables to supply to jinja templates when rendering.
+# Default: {}
+# c.ServerApp.jinja_template_vars = {}
+
+## Dict of Python modules to load as Jupyter server extensions.Entry values can
+# be used to enable and disable the loading ofthe extensions. The extensions
+# will be loaded in alphabetical order.
+# Default: {}
+# c.ServerApp.jpserver_extensions = {}
+
+## The kernel manager class to use.
+# Default: 'jupyter_server.services.kernels.kernelmanager.AsyncMappingKernelManager'
+# c.ServerApp.kernel_manager_class = 'jupyter_server.services.kernels.kernelmanager.AsyncMappingKernelManager'
+
+## The kernel spec manager class to use. Should be a subclass of
+# `jupyter_client.kernelspec.KernelSpecManager`.
+#
+# The Api of KernelSpecManager is provisional and might change without warning
+# between this version of Jupyter and the next stable one.
+# Default: 'jupyter_client.kernelspec.KernelSpecManager'
+# c.ServerApp.kernel_spec_manager_class = 'jupyter_client.kernelspec.KernelSpecManager'
+
+## Preferred kernel message protocol over websocket to use (default: None). If an
+# empty string is passed, select the legacy protocol. If None, the selected
+# protocol will depend on what the front-end supports (usually the most recent
+# protocol supported by the back-end and the front-end).
+# Default: None
+# c.ServerApp.kernel_ws_protocol = None
+
+## The full path to a private key file for usage with SSL/TLS.
+# Default: ''
+# c.ServerApp.keyfile = ''
+
+## Whether to limit the rate of IOPub messages (default: True). If True, use
+# iopub_msg_rate_limit, iopub_data_rate_limit and/or rate_limit_window to tune
+# the rate.
+# Default: True
+# c.ServerApp.limit_rate = True
+
+## Hostnames to allow as local when allow_remote_access is False.
+#
+# Local IP addresses (such as 127.0.0.1 and ::1) are automatically accepted
+# as local as well.
+# Default: ['localhost']
+# c.ServerApp.local_hostnames = ['localhost']
+
+## The date format used by logging formatters for %(asctime)s
+# See also: Application.log_datefmt
+# c.ServerApp.log_datefmt = '%Y-%m-%d %H:%M:%S'
+
+## The Logging format template
+# See also: Application.log_format
+# c.ServerApp.log_format = '[%(name)s]%(highlevel)s %(message)s'
+
+## Set the log level by value or name.
+# See also: Application.log_level
+# c.ServerApp.log_level = 30
+
+## The login handler class to use.
+# Default: 'jupyter_server.auth.login.LoginHandler'
+# c.ServerApp.login_handler_class = 'jupyter_server.auth.login.LoginHandler'
+
+## The logout handler class to use.
+# Default: 'jupyter_server.auth.logout.LogoutHandler'
+# c.ServerApp.logout_handler_class = 'jupyter_server.auth.logout.LogoutHandler'
+
+## Sets the maximum allowed size of the client request body, specified in the
+# Content-Length request header field. If the size in a request exceeds the
+# configured value, a malformed HTTP message is returned to the client.
+#
+# Note: max_body_size is applied even in streaming mode.
+# Default: 536870912
+# c.ServerApp.max_body_size = 536870912
+
+## Gets or sets the maximum amount of memory, in bytes, that is allocated for use
+# by the buffer manager.
+# Default: 536870912
+# c.ServerApp.max_buffer_size = 536870912
+
+## Gets or sets a lower bound on the open file handles process resource limit.
+# This may need to be increased if you run into an OSError: [Errno 24] Too many
+# open files. This is not applicable when running on Windows.
+# Default: 0
+# c.ServerApp.min_open_files_limit = 0
+
+## DEPRECATED, use root_dir.
+# Default: ''
+# c.ServerApp.notebook_dir = ''
+
+## Whether to open in a browser after starting.
+# The specific browser used is platform dependent and
+# determined by the python standard library `webbrowser`
+# module, unless it is overridden using the --browser
+# (ServerApp.browser) configuration option.
+# Default: False
+c.ServerApp.open_browser = False
+
+## Hashed password to use for web authentication.
+#
+# To generate, type in a python/IPython shell:
+#
+# from jupyter_server.auth import passwd; passwd()
+#
+# The string should be of the form type:salt:hashed-
+# password.
+# Default: ''
+c.ServerApp.password = ''
+
+## Forces users to use a password for the Jupyter server.
+# This is useful in a multi user environment, for instance when
+# everybody in the LAN can access each other's machine through ssh.
+#
+# In such a case, serving on localhost is not secure since
+# any user can connect to the Jupyter server via ssh.
+# Default: False
+# c.ServerApp.password_required = False
+
+## The port the server will listen on (env: JUPYTER_PORT).
+# Default: 0
+c.ServerApp.port = 8888
+
+## The number of additional ports to try if the specified port is not available
+# (env: JUPYTER_PORT_RETRIES).
+# Default: 50
+# c.ServerApp.port_retries = 50
+
+## Preferred starting directory to use for notebooks and kernels.
+# Default: ''
+# c.ServerApp.preferred_dir = ''
+
+## DISABLED: use %pylab or %matplotlib in the notebook to enable matplotlib.
+# Default: 'disabled'
+# c.ServerApp.pylab = 'disabled'
+
+## If True, display controls to shut down the Jupyter server, such as menu items
+# or buttons.
+# Default: True
+c.ServerApp.quit_button = True
+
+## (sec) Time window used to
+# check the message and data rate limits.
+# Default: 3
+# c.ServerApp.rate_limit_window = 3
+
+## Reraise exceptions encountered loading server extensions?
+# Default: False
+# c.ServerApp.reraise_server_extension_failures = False
+
+## The directory to use for notebooks and kernels.
+# Default: ''
+c.ServerApp.root_dir = '/notebooks/fidle-master'
+
+
+## The session manager class to use.
+# Default: 'jupyter_server.services.sessions.sessionmanager.SessionManager'
+# c.ServerApp.session_manager_class = 'jupyter_server.services.sessions.sessionmanager.SessionManager'
+
+## Instead of starting the Application, dump configuration to stdout
+# See also: Application.show_config
+# c.ServerApp.show_config = False
+
+## Instead of starting the Application, dump configuration to stdout (as JSON)
+# See also: Application.show_config_json
+# c.ServerApp.show_config_json = False
+
+## Shut down the server after N seconds with no kernels or terminals running and
+# no activity. This can be used together with culling idle kernels
+# (MappingKernelManager.cull_idle_timeout) to shutdown the Jupyter server when
+# it's not in use. This is not precisely timed: it may shut down up to a minute
+# later. 0 (the default) disables this automatic shutdown.
+# Default: 0
+# c.ServerApp.shutdown_no_activity_timeout = 0
+
+## The UNIX socket the Jupyter server will listen on.
+# Default: ''
+# c.ServerApp.sock = ''
+
+## The permissions mode for UNIX socket creation (default: 0600).
+# Default: '0600'
+# c.ServerApp.sock_mode = '0600'
+
+## Supply SSL options for the tornado HTTPServer.
+# See the tornado docs for details.
+# Default: {}
+# c.ServerApp.ssl_options = {}
+
+## Supply overrides for terminado. Currently only supports "shell_command".
+# Default: {}
+# c.ServerApp.terminado_settings = {}
+
+## Set to False to disable terminals.
+#
+# This does *not* make the server more secure by itself.
+# Anything the user can in a terminal, they can also do in a notebook.
+#
+# Terminals may also be automatically disabled if the terminado package
+# is not available.
+# Default: True
+# c.ServerApp.terminals_enabled = True
+
+## Token used for authenticating first-time connections to the server.
+#
+# The token can be read from the file referenced by JUPYTER_TOKEN_FILE or set directly
+# with the JUPYTER_TOKEN environment variable.
+#
+# When no password is enabled,
+# the default is to generate a new, random token.
+#
+# Setting to an empty string disables authentication altogether, which
+# is NOT RECOMMENDED.
+# Default: '<generated>'
+# c.ServerApp.token = '<generated>'
+
+## Supply overrides for the tornado.web.Application that the Jupyter server uses.
+# Default: {}
+# c.ServerApp.tornado_settings = {}
+
+## Whether to trust or not X-Scheme/X-Forwarded-Proto and X-Real-Ip/X-Forwarded-
+# For headerssent by the upstream reverse proxy. Necessary if the proxy handles
+# SSL
+# Default: False
+# c.ServerApp.trust_xheaders = False
+
+## Disable launching browser by redirect file
+# For versions of notebook > 5.7.2, a security feature measure was added that
+# prevented the authentication token used to launch the browser from being visible.
+# This feature makes it difficult for other users on a multi-user system from
+# running code in your Jupyter session as you.
+# However, some environments (like Windows Subsystem for Linux (WSL) and Chromebooks),
+# launching a browser using a redirect file can lead the browser failing to load.
+# This is because of the difference in file structures/paths between the runtime and
+# the browser.
+#
+# Disabling this setting to False will disable this behavior, allowing the browser
+# to launch by using a URL and visible token (as before).
+# Default: True
+# c.ServerApp.use_redirect_file = True
+
+## Specify where to open the server on startup. This is the
+# `new` argument passed to the standard library method `webbrowser.open`.
+# The behaviour is not guaranteed, but depends on browser support. Valid
+# values are:
+#
+# - 2 opens a new tab,
+# - 1 opens a new window,
+# - 0 opens in an existing window.
+#
+# See the `webbrowser.open` documentation for details.
+# Default: 2
+# c.ServerApp.webbrowser_open_new = 2
+
+## Set the tornado compression options for websocket connections.
+#
+# This value will be returned from
+# :meth:`WebSocketHandler.get_compression_options`. None (default) will disable
+# compression. A dict (even an empty one) will enable compression.
+#
+# See the tornado docs for WebSocketHandler.get_compression_options for details.
+# Default: None
+# c.ServerApp.websocket_compression_options = None
+
+## The base URL for websockets,
+# if it differs from the HTTP server (hint: it almost certainly doesn't).
+#
+# Should be in the form of an HTTP origin: ws[s]://hostname[:port]
+# Default: ''
+# c.ServerApp.websocket_url = ''
diff --git a/docker_v2/notebook.json b/docker_v2/notebook.json
new file mode 100644
index 0000000..9066bef
--- /dev/null
+++ b/docker_v2/notebook.json
@@ -0,0 +1,6 @@
+{
+ "load_extensions": {
+ "execute_time/ExecuteTime": true,
+ "tree-filter/index": true
+ }
+}
diff --git a/docker/requirements-cpu.txt b/docker_v2/requirements-cpu.txt
similarity index 100%
rename from docker/requirements-cpu.txt
rename to docker_v2/requirements-cpu.txt
diff --git a/docker/requirements.txt b/docker_v2/requirements.txt
similarity index 100%
rename from docker/requirements.txt
rename to docker_v2/requirements.txt
--
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