Skip to content
Snippets Groups Projects
Commit 317dbb47 authored by Jean-Baptiste Keck's avatar Jean-Baptiste Keck
Browse files

fixed new Dockerfile

parent 767cd037
No related branches found
No related tags found
1 merge request!16MPI operators
Hide whitespace changes
Inline Side-by-side
ci/docker_images/ubuntu/disco/Dockerfile
+ 90
− 132
View file @ 317dbb47
...@@ -8,6 +8,7 @@ RUN apt-get update ...@@ -8,6 +8,7 @@ RUN apt-get update
RUN apt-get full-upgrade -y RUN apt-get full-upgrade -y
# get build tools and required libraries # get build tools and required libraries
RUN apt-get install -y apt-utils
RUN apt-get install -y expat RUN apt-get install -y expat
RUN apt-get install -y unzip RUN apt-get install -y unzip
RUN apt-get install -y xz-utils RUN apt-get install -y xz-utils
...@@ -42,6 +43,7 @@ RUN apt-get install -y libfftw3-mpi-dev ...@@ -42,6 +43,7 @@ RUN apt-get install -y libfftw3-mpi-dev
RUN apt-get install -y libgmp-dev RUN apt-get install -y libgmp-dev
RUN apt-get install -y libmpfr-dev RUN apt-get install -y libmpfr-dev
RUN apt-get install -y libmpc-dev RUN apt-get install -y libmpc-dev
RUN apt-get install -y libflint-dev
RUN apt-get install -y libsparsehash-dev RUN apt-get install -y libsparsehash-dev
RUN apt-get install -y libcairo-dev RUN apt-get install -y libcairo-dev
RUN apt-get install -y libcairomm-1.0-dev RUN apt-get install -y libcairomm-1.0-dev
...@@ -49,11 +51,14 @@ RUN apt-get install -y python ...@@ -49,11 +51,14 @@ RUN apt-get install -y python
RUN apt-get install -y python-dev RUN apt-get install -y python-dev
RUN apt-get install -y python-pip RUN apt-get install -y python-pip
RUN apt-get install -y python-tk RUN apt-get install -y python-tk
RUN apt-get install -y python-backports.weakref
RUN apt-get install -y python-backports.functools-lru-cache
RUN apt-get install -y opencl-headers RUN apt-get install -y opencl-headers
RUN apt-get install -y ocl-icd-libopencl1 RUN apt-get install -y ocl-icd-libopencl1
RUN apt-get install -y clinfo RUN apt-get install -y clinfo
RUN apt-get install -y clang
# python packages # some python packages
RUN pip install --upgrade pip RUN pip install --upgrade pip
RUN pip install --upgrade setuptools RUN pip install --upgrade setuptools
RUN pip install --upgrade backports.weakref RUN pip install --upgrade backports.weakref
...@@ -80,170 +85,123 @@ RUN pip install --upgrade pycairo ...@@ -80,170 +85,123 @@ RUN pip install --upgrade pycairo
RUN pip install --upgrade weave RUN pip install --upgrade weave
RUN pip install --upgrade argparse_color_formatter RUN pip install --upgrade argparse_color_formatter
RUN pip install --upgrade numba RUN pip install --upgrade numba
RUN pip install --upgrade pybind11
# For documentation
# RUN pip install --upgrade sphinx # documentation
# RUN pip install --upgrade sphinxcontrib-bibtex RUN pip install --upgrade sphinx
# RUN pip install --upgrade sphinx_bootstrap_theme RUN pip install --upgrade sphinxcontrib-bibtex
# RUN pip install --upgrade strip-hints RUN pip install --upgrade sphinx_bootstrap_theme
# RUN cd /tmp && git clone https://github.com/sphinx-contrib/doxylink.git && cd doxylink/sphinxcontrib/doxylink \ RUN pip install --upgrade strip-hints
# && mv doxylink.py doxylink.py3 && strip-hints doxylink.py3 > doxylink.py && rm doxylink.py3 \ RUN cd /tmp && git clone https://github.com/sphinx-contrib/doxylink.git && cd doxylink/sphinxcontrib/doxylink \
# && mv parsing.py parsing.py3 && strip-hints parsing.py3 > parsing.py && rm parsing.py3 \ && mv doxylink.py doxylink.py3 && strip-hints doxylink.py3 > doxylink.py && rm doxylink.py3 \
# && cd ../.. && python setup.py install && mv parsing.py parsing.py3 && strip-hints parsing.py3 > parsing.py && rm parsing.py3 \
&& cd ../.. && python setup.py install
# scitools (python-scitools does not exist on ubuntu:bionic) # scitools (python-scitools does not exist on ubuntu:disco)
RUN cd /tmp \ RUN cd /tmp \
&& git clone https://github.com/hplgit/scitools \ && git clone https://github.com/hplgit/scitools \
&& cd scitools \ && cd scitools \
&& pip install . \ && pip install . \
&& cd - \ && cd - \
&& rm -Rf /tmp/scitools && rm -Rf /tmp/scitools
# patchelf # Intel OpenCl runtime
RUN cd /tmp \ RUN cd /tmp \
&& git clone https://github.com/NixOS/patchelf \ && mkdir intel \
&& cd patchelf \ && cd intel \
&& ./bootstrap.sh \ && wget http://registrationcenter-download.intel.com/akdlm/irc_nas/vcp/15532/l_opencl_p_18.1.0.015.tgz \
&& ./configure \ && tar -xvzf l_opencl_p_18.1.0.015.tgz \
&& make \ && cd l_opencl_p_18.1.0.015 \
&& make install \ && sed -i "s/ACCEPT_EULA=decline/ACCEPT_EULA=accept/g" "silent.cfg" \
&& cd - \ && ./install.sh --silent ./silent.cfg \
&& rm -Rf /tmp/patchelf && cd /tmp \
RUN wget -O - https://apt.llvm.org/llvm-snapshot.gpg.key | apt-key add - \
&& echo 'deb http://apt.llvm.org/bionic/ llvm-toolchain-bionic main' >> /etc/apt/sources.list \
&& echo 'deb-src http://apt.llvm.org/bionic/ llvm-toolchain-bionic main' >> /etc/apt/sources.list \
&& apt-get update \
&& apt-get install --assume-yes llvm-3.9 clang-3.9 libllvm3.9 libclang-3.9-dev
# Intel OpenCl
RUN cd /tmp \
&& mkdir intel \
&& cd intel \
&& wget http://registrationcenter-download.intel.com/akdlm/irc_nas/12556/opencl_runtime_16.1.2_x64_rh_6.4.0.37.tgz \
&& tar -xvzf opencl_runtime_16.1.2_x64_rh_6.4.0.37.tgz \
&& cd opencl_runtime_16.1.2_x64_rh_6.4.0.37 \
&& ls -la \
&& sed -i "s/ACCEPT_EULA=decline/ACCEPT_EULA=accept/g" "silent.cfg" \
&& ./install.sh --silent ./silent.cfg \
&& cd /tmp \
&& rm -Rf /tmp/intel && rm -Rf /tmp/intel
# Fix OpenCl ICD # clpeak
RUN ln -s /usr/lib/x86_64-linux-gnu/libOpenCL.so.1 /usr/lib/x86_64-linux-gnu/libOpenCL.so RUN cd /tmp \
RUN ldconfig && git clone https://github.com/krrishnarraj/clpeak \
&& cd clpeak/ \
&& mkdir build \
&& cd build/ \
&& cmake .. \
&& make -j$(nproc) \
&& mv clpeak /usr/local/bin/ \
&& cd - \
&& rm -Rf /tmp/clpeak
# pyopencl # pyopencl
RUN cd /tmp \ RUN cd /tmp \
&& pip install pybind11 \ && git clone https://github.com/inducer/pyopencl \
&& git clone https://github.com/inducer/pyopencl \ && cd pyopencl \
&& cd pyopencl \ && git submodule update --init \
&& git submodule update --init \ && ./configure.py \
&& ./configure.py \ && make -j$(nproc) \
&& make \ && pip install --upgrade . \
&& pip install --upgrade . \ && cd - \
&& cd - \
&& rm -Rf /tmp/pyopencl && rm -Rf /tmp/pyopencl
# oclgrind
RUN apt-get install --assume-yes --allow-unauthenticated llvm-6.0 clang-6.0 libllvm6.0 libclang-6.0-dev
RUN cd /tmp \
&& git clone https://github.com/jrprice/Oclgrind \
&& cd Oclgrind \
&& mkdir build \
&& cd build \
&& cmake -DCMAKE_BUILD_TYPE=Release .. \
&& make \
&& make install \
&& cd - \
&& rm -Rf /tmp/Oclgrind
# clpeak
RUN cd /tmp \
&& git clone https://github.com/krrishnarraj/clpeak \
&& cd clpeak/ \
&& mkdir build \
&& cd build/ \
&& cmake .. \
&& make \
&& mv clpeak /usr/local/bin/ \
&& cd - \
&& rm -Rf /tmp/clpeak
# clFFT # clFFT
RUN cd /tmp \ RUN cd /tmp \
&& ln -s /usr/local/lib /usr/local/lib64 \ && ln -s /usr/local/lib /usr/local/lib64 \
&& git clone https://github.com/clMathLibraries/clFFT \ && git clone https://github.com/clMathLibraries/clFFT \
&& cd clFFT \ && cd clFFT \
&& cd src \ && cd src \
&& mkdir build \ && mkdir build \
&& cd build \ && cd build \
&& cmake -DCMAKE_BUILD_TYPE=Release .. \ && cmake -DCMAKE_BUILD_TYPE=Release .. \
&& make \ && make -j$(nproc) \
&& make install \ && make install \
&& cd - \ && cd - \
&& rm -Rf /tmp/clFFT && rm -Rf /tmp/clFFT
# gpyFFT # gpyFFT
RUN cd /tmp \ RUN cd /tmp \
&& git clone https://github.com/geggo/gpyfft \ && git clone https://github.com/geggo/gpyfft \
&& cd gpyfft \ && cd gpyfft \
&& pip install . \ && pip install . \
&& cd - \ && cd - \
&& rm -Rf /tmp/gpyfft && rm -Rf /tmp/gpyfft
# python graphtools
RUN cd /tmp \
&& wget https://downloads.skewed.de/graph-tool/graph-tool-2.26.tar.bz2 \
&& tar -xvjf graph-tool-2.26.tar.bz2 \
&& cd graph-tool-2.26 \
&& ./autogen.sh \
&& mkdir pycairo \
&& find /usr/ -name 'pycairo.h' -exec cp {} ./pycairo/pycairo.h \; \
&& CPPFLAGS=-I. ./configure \
&& CPPFLAGS=-I. make -j16 \
&& make install \
&& cd - \
&& rm -Rf /tmp/graph-tool-2.26
# clang 6 for hysop build test
RUN apt-get install -y clang
# pyfftw (with R2R transforms - experimental branch) # pyfftw (with R2R transforms - experimental branch)
RUN cd /tmp \ RUN cd /tmp \
&& git clone https://github.com/drwells/pyFFTW \ && git clone https://github.com/drwells/pyFFTW \
&& cd pyFFTW \ && cd pyFFTW \
&& git checkout r2r-try-two \ && git checkout r2r-try-two \
&& sed -i 's/\(fftw3[fl]\?_\)threads/\1omp/g' setup.py \ && sed -i 's/\(fftw3[fl]\?_\)threads/\1omp/g' setup.py \
&& pip install . \ && pip install . \
&& cd - \ && cd - \
&& rm -Rf /tmp/pyFFTW && rm -Rf /tmp/pyFFTW
# python-flint # python-flint
RUN cd /tmp \ RUN cd /tmp \
&& wget http://flintlib.org/flint-2.5.2.tar.gz \
&& tar -xvzf flint-2.5.2.tar.gz \
&& cd flint-2.5.2 \
&& ./configure \
&& make -j16 \
&& make install \
&& cd - \
&& rm -Rf flint-2.5.2 \
&& wget https://github.com/fredrik-johansson/arb/archive/2.16.0.tar.gz \ && wget https://github.com/fredrik-johansson/arb/archive/2.16.0.tar.gz \
&& tar -xvzf 2.16.0.tar.gz \ && tar -xvzf 2.16.0.tar.gz \
&& cd arb-2.16.0 \ && cd arb-2.16.0 \
&& ./configure \ && ./configure \
&& make -j16 \ && make -j$(nproc) \
&& make install \ && make install \
&& cd - \ && cd - \
&& rm -Rf arb-2.16.0 \ && rm -Rf arb-2.16.0
RUN cd /tmp \
&& git clone https://github.com/fredrik-johansson/python-flint \ && git clone https://github.com/fredrik-johansson/python-flint \
&& cd python-flint \ && cd python-flint \
&& pip install . \ && pip install . \
&& cd - \ && cd - \
&& rm -Rf python-flint && rm -Rf python-flint
# python graphtools
RUN cd /tmp \
&& wget https://downloads.skewed.de/graph-tool/graph-tool-2.28.tar.bz2 \
&& tar -xvjf graph-tool-2.28.tar.bz2 \
&& cd graph-tool-2.28 \
&& ./autogen.sh \
&& mkdir pycairo \
&& find /usr/ -name 'pycairo.h' -exec cp {} ./pycairo/pycairo.h \; \
&& CPPFLAGS=-I. ./configure \
&& CPPFLAGS=-I. make -j16 \
&& make install \
&& cd - \
&& rm -Rf /tmp/graph-tool-2.28
# ensure all libraries are known by the runtime linker # ensure all libraries are known by the runtime linker
RUN ldconfig RUN ldconfig
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment