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Commit 767cd037 authored by Jean-Baptiste Keck's avatar Jean-Baptiste Keck
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dockerfile for ubuntu disco dingo

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Stage: env
    Stage: configure
      Stage: build
        Stage: install
          Stage: test
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            # Test docker for gitlab-ci
            FROM ubuntu:disco
            MAINTAINER Jean-Baptiste.Keck@imag.fr
            # upgrade initial image
            ENV DEBIAN_FRONTEND noninteractive
            RUN apt-get update
            RUN apt-get full-upgrade -y
            # get build tools and required libraries
            RUN apt-get install -y expat
            RUN apt-get install -y unzip
            RUN apt-get install -y xz-utils
            RUN apt-get install -y automake
            RUN apt-get install -y libtool
            RUN apt-get install -y pkg-config
            RUN apt-get install -y cmake
            RUN apt-get install -y git
            RUN apt-get install -y vim
            RUN apt-get install -y ssh
            RUN apt-get install -y gcc
            RUN apt-get install -y gfortran
            RUN apt-get install -y cython
            RUN apt-get install -y swig
            RUN apt-get install -y lsb-core
            RUN apt-get install -y cpio
            RUN apt-get install -y libnuma1
            RUN apt-get install -y libpciaccess0
            RUN apt-get install -y libreadline-dev
            RUN apt-get install -y libboost-all-dev
            RUN apt-get install -y libblas-dev
            RUN apt-get install -y liblapack-dev
            RUN apt-get install -y libcgal-dev
            RUN apt-get install -y libatlas-base-dev
            RUN apt-get install -y libopenblas-dev
            RUN apt-get install -y libgfortran3
            RUN apt-get install -y libgcc1
            RUN apt-get install -y libopenmpi-dev
            RUN apt-get install -y libhdf5-openmpi-dev
            RUN apt-get install -y libfftw3-dev
            RUN apt-get install -y libfftw3-mpi-dev
            RUN apt-get install -y libgmp-dev
            RUN apt-get install -y libmpfr-dev
            RUN apt-get install -y libmpc-dev
            RUN apt-get install -y libsparsehash-dev
            RUN apt-get install -y libcairo-dev
            RUN apt-get install -y libcairomm-1.0-dev
            RUN apt-get install -y python
            RUN apt-get install -y python-dev
            RUN apt-get install -y python-pip
            RUN apt-get install -y python-tk
            RUN apt-get install -y opencl-headers
            RUN apt-get install -y ocl-icd-libopencl1
            RUN apt-get install -y clinfo
            # python packages
            RUN pip install --upgrade pip
            RUN pip install --upgrade setuptools
            RUN pip install --upgrade backports.weakref
            RUN pip install --upgrade cffi
            RUN pip install --upgrade wheel
            RUN pip install --upgrade pytest
            RUN pip install --upgrade numpy
            RUN pip install --upgrade scipy
            RUN pip install --upgrade sympy
            RUN pip install --upgrade matplotlib
            RUN pip install --upgrade mpi4py
            RUN CC=mpicc HDF5_MPI="ON" pip install --upgrade --no-binary=h5py h5py
            RUN pip install --upgrade gmpy2
            RUN pip install --upgrade psutil
            RUN pip install --upgrade py-cpuinfo
            RUN pip install --upgrade Mako
            RUN pip install --upgrade subprocess32
            RUN pip install --upgrade editdistance
            RUN pip install --upgrade portalocker
            RUN pip install --upgrade colors.py
            RUN pip install --upgrade tee
            RUN pip install --upgrade primefac
            RUN pip install --upgrade pycairo
            RUN pip install --upgrade weave
            RUN pip install --upgrade argparse_color_formatter
            RUN pip install --upgrade numba
            # For documentation
            # RUN pip install --upgrade sphinx
            # RUN pip install --upgrade sphinxcontrib-bibtex
            # RUN pip install --upgrade sphinx_bootstrap_theme
            # RUN pip install --upgrade strip-hints
            # RUN cd /tmp && git clone https://github.com/sphinx-contrib/doxylink.git && cd doxylink/sphinxcontrib/doxylink \
            # && mv doxylink.py doxylink.py3 && strip-hints doxylink.py3 > doxylink.py && rm doxylink.py3 \
            # && mv parsing.py parsing.py3 && strip-hints parsing.py3 > parsing.py && rm parsing.py3 \
            # && cd ../.. && python setup.py install
            # scitools (python-scitools does not exist on ubuntu:bionic)
            RUN cd /tmp \
            && git clone https://github.com/hplgit/scitools \
            && cd scitools \
            && pip install . \
            && cd - \
            && rm -Rf /tmp/scitools
            # patchelf
            RUN cd /tmp \
            && git clone https://github.com/NixOS/patchelf \
            && cd patchelf \
            && ./bootstrap.sh \
            && ./configure \
            && make \
            && make install \
            && cd - \
            && rm -Rf /tmp/patchelf
            RUN wget -O - https://apt.llvm.org/llvm-snapshot.gpg.key | apt-key add - \
            && echo 'deb http://apt.llvm.org/bionic/ llvm-toolchain-bionic main' >> /etc/apt/sources.list \
            && echo 'deb-src http://apt.llvm.org/bionic/ llvm-toolchain-bionic main' >> /etc/apt/sources.list \
            && apt-get update \
            && apt-get install --assume-yes llvm-3.9 clang-3.9 libllvm3.9 libclang-3.9-dev
            # Intel OpenCl
            RUN cd /tmp \
            && mkdir intel \
            && cd intel \
            && wget http://registrationcenter-download.intel.com/akdlm/irc_nas/12556/opencl_runtime_16.1.2_x64_rh_6.4.0.37.tgz \
            && tar -xvzf opencl_runtime_16.1.2_x64_rh_6.4.0.37.tgz \
            && cd opencl_runtime_16.1.2_x64_rh_6.4.0.37 \
            && ls -la \
            && sed -i "s/ACCEPT_EULA=decline/ACCEPT_EULA=accept/g" "silent.cfg" \
            && ./install.sh --silent ./silent.cfg \
            && cd /tmp \
            && rm -Rf /tmp/intel
            # Fix OpenCl ICD
            RUN ln -s /usr/lib/x86_64-linux-gnu/libOpenCL.so.1 /usr/lib/x86_64-linux-gnu/libOpenCL.so
            RUN ldconfig
            # pyopencl
            RUN cd /tmp \
            && pip install pybind11 \
            && git clone https://github.com/inducer/pyopencl \
            && cd pyopencl \
            && git submodule update --init \
            && ./configure.py \
            && make \
            && pip install --upgrade . \
            && cd - \
            && rm -Rf /tmp/pyopencl
            # oclgrind
            RUN apt-get install --assume-yes --allow-unauthenticated llvm-6.0 clang-6.0 libllvm6.0 libclang-6.0-dev
            RUN cd /tmp \
            && git clone https://github.com/jrprice/Oclgrind \
            && cd Oclgrind \
            && mkdir build \
            && cd build \
            && cmake -DCMAKE_BUILD_TYPE=Release .. \
            && make \
            && make install \
            && cd - \
            && rm -Rf /tmp/Oclgrind
            # clpeak
            RUN cd /tmp \
            && git clone https://github.com/krrishnarraj/clpeak \
            && cd clpeak/ \
            && mkdir build \
            && cd build/ \
            && cmake .. \
            && make \
            && mv clpeak /usr/local/bin/ \
            && cd - \
            && rm -Rf /tmp/clpeak
            # clFFT
            RUN cd /tmp \
            && ln -s /usr/local/lib /usr/local/lib64 \
            && git clone https://github.com/clMathLibraries/clFFT \
            && cd clFFT \
            && cd src \
            && mkdir build \
            && cd build \
            && cmake -DCMAKE_BUILD_TYPE=Release .. \
            && make \
            && make install \
            && cd - \
            && rm -Rf /tmp/clFFT
            # gpyFFT
            RUN cd /tmp \
            && git clone https://github.com/geggo/gpyfft \
            && cd gpyfft \
            && pip install . \
            && cd - \
            && rm -Rf /tmp/gpyfft
            # python graphtools
            RUN cd /tmp \
            && wget https://downloads.skewed.de/graph-tool/graph-tool-2.26.tar.bz2 \
            && tar -xvjf graph-tool-2.26.tar.bz2 \
            && cd graph-tool-2.26 \
            && ./autogen.sh \
            && mkdir pycairo \
            && find /usr/ -name 'pycairo.h' -exec cp {} ./pycairo/pycairo.h \; \
            && CPPFLAGS=-I. ./configure \
            && CPPFLAGS=-I. make -j16 \
            && make install \
            && cd - \
            && rm -Rf /tmp/graph-tool-2.26
            # clang 6 for hysop build test
            RUN apt-get install -y clang
            # pyfftw (with R2R transforms - experimental branch)
            RUN cd /tmp \
            && git clone https://github.com/drwells/pyFFTW \
            && cd pyFFTW \
            && git checkout r2r-try-two \
            && sed -i 's/\(fftw3[fl]\?_\)threads/\1omp/g' setup.py \
            && pip install . \
            && cd - \
            && rm -Rf /tmp/pyFFTW
            # python-flint
            RUN cd /tmp \
            && wget http://flintlib.org/flint-2.5.2.tar.gz \
            && tar -xvzf flint-2.5.2.tar.gz \
            && cd flint-2.5.2 \
            && ./configure \
            && make -j16 \
            && make install \
            && cd - \
            && rm -Rf flint-2.5.2 \
            && wget https://github.com/fredrik-johansson/arb/archive/2.16.0.tar.gz \
            && tar -xvzf 2.16.0.tar.gz \
            && cd arb-2.16.0 \
            && ./configure \
            && make -j16 \
            && make install \
            && cd - \
            && rm -Rf arb-2.16.0 \
            && git clone https://github.com/fredrik-johansson/python-flint \
            && cd python-flint \
            && pip install . \
            && cd - \
            && rm -Rf python-flint
            # ensure all libraries are known by the runtime linker
            RUN ldconfig
            # clean cached packages
            RUN rm -rf /var/lib/apt/lists/*
            RUN rm -rf $HOME/.cache/pip/*
            RUN rm -rf /tmp/*
            CMD ["/bin/bash"]
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