Set a timeout for calls to input.Gather

Changing the internal behavior around running plugins. Each plugin
will now have it's own goroutine with it's own ticker. This means that a
hung plugin will not block any other plugins. When a plugin is hung, we
will log an error message every interval, letting users know which
plugin is hung.

Currently the input interface does not have any methods for killing a
running Gather call, so there is nothing we can do but log an "ERROR"
and move on. This will give some visibility into the plugin that is
acting up.

closes #1230
fixes #479