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Update Linux installation with pip authored by Jean-Luc Parouty's avatar Jean-Luc Parouty
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Using-Fidle/Linux-installation-with-pip.md
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...@@ -42,39 +42,30 @@ $ cd ~/fidle-tp ...@@ -42,39 +42,30 @@ $ cd ~/fidle-tp
The idea is to create a virtual python environment, in order not to "pollute" your system.\ The idea is to create a virtual python environment, in order not to "pollute" your system.\
This virtual environment will be contained in a sub folder (fidle-env). This virtual environment will be contained in a sub folder (fidle-env).
To create a virtual environment "fidle-env" and activate it: **FIRST**, we create a **virtual environment** "fidle-env" and activate it:
```plaintext ```plaintext
$ python3 -m venv fidle-env $ python3 -m venv fidle-env
$ source ./fidle-env/bin/activate $ source ./fidle-env/bin/activate
``` ```
We can now install all the necessary modules in our python environment : We can now install all the necessary modules in our python environment.
**SECOND**, we have to **install PyTorch**, according PyTorch documentation : https://pytorch.org/get-started/locally/
Example: on Linux for cpu :
```
pip3 install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
```
**THIRD**, we will now install the **rest of the modules**:-)
```plaintext ```plaintext
(fidle-env) $ pip install --extra-index-url https://download.pytorch.org/whl/cpu \ (fidle-env) $ pip install torch-geometric torchtext torchdata lightning \
torch \ tensorboard keras transformers numpy Scikit-image Scikit-learn \
torchvision \ Matplotlib plotly seaborn barviz pyarrow Pandas Pandoc \
torch-geometric \ pyyaml Jupyterlab fidle
torchtext \
torchdata \
lightning \
tensorboard \
keras \
transformers \
numpy \
Scikit-image \
Scikit-learn \
Matplotlib \
plotly \
seaborn \
barviz \
pyarrow \
Pandas \
Pandoc \
pyyaml \
Jupyterlab \
fidle
``` ```
It will take a little while, but should go very well :-) It will take a little while, but should go very well :-)
...@@ -86,7 +77,7 @@ It will take a little while, but should go very well :-) ...@@ -86,7 +77,7 @@ It will take a little while, but should go very well :-)
Now all that remains is to install the notebooks and datasets :-)\ Now all that remains is to install the notebooks and datasets :-)\
Nous allons faire cela avec la commande `fid` de Fidle. Nous allons faire cela avec la commande `fid` de Fidle.
Toujours depuis notre dossier `fidle-tp` Still from our folder `fidle-tp`
```plaintext ```plaintext
(fidle-env) $ fid install --quiet (fidle-env) $ fid install --quiet
...@@ -97,15 +88,15 @@ You should have something like :\ ...@@ -97,15 +88,15 @@ You should have something like :\
```plaintext ```plaintext
========================================================== ==========================================================
fid - Your favorite Fidle admin command :-) (v2.2b10) fid - Your favorite Fidle admin command :-) (v2.3.0)
========================================================== ==========================================================
Install Fidle notebooks in . : Install Fidle notebooks in . :
Install ressource : fidle-master Install ressource : fidle-master
In directory : . In directory : .
Extract : [########################################] 100.0% of 152 files Extract : [########################################] 100.0% of 113 files
Installed in : ./fidle-master-2.2.4 Installed in : ./fidle-master-3.0.5
Done. Done.
Install Fidle datasets in . : Install Fidle datasets in . :
...@@ -124,7 +115,7 @@ The tree structure is normally as follows: ...@@ -124,7 +115,7 @@ The tree structure is normally as follows:
```plaintext ```plaintext
fidle-tp fidle-tp
├── fidle-master-2.2.4 Contains notebooks ├── fidle-master-3.0.5 Contains notebooks
├── fidle-datasets Contains datasets ├── fidle-datasets Contains datasets
└── fidle-env Virtual environment └── fidle-env Virtual environment
``` ```
...@@ -143,7 +134,7 @@ You should have something like :\ ...@@ -143,7 +134,7 @@ You should have something like :\
```plaintext ```plaintext
========================================================== ==========================================================
fid - Your favorite Fidle admin command :-) (v2.2b10) fid - Your favorite Fidle admin command :-) (v2.3.0)
========================================================== ==========================================================
Notebooks and datasets can only be found if they are in/near the explored folder. Notebooks and datasets can only be found if they are in/near the explored folder.
...@@ -157,25 +148,23 @@ Datasets dir found : ...@@ -157,25 +148,23 @@ Datasets dir found :
Notebooks dir found : Notebooks dir found :
/home/dupont/fidle-tp/fidle-master-2.2.4 (Notebooks Fidle / 2.2.4) /home/dupont/fidle-tp/fidle-master-3.0.5 (Notebooks Fidle / 3.0.5)
/home/dupont/fidle (Notebooks Fidle / 2.2.4)
Check environment : Check environment :
Python : Ok (3.8.10) Python : Ok (3.9.2)
Fidle module : Ok (2.2b10) Fidle module : Ok (2.3.0)
tensorflow : Ok (2.12.0) keras : Ok (3.0.4)
tensorflow.keras : Ok (2.12.0) numpy : Ok (1.24.1)
numpy : Ok (1.23.3) sklearn : Ok (1.4.0)
sklearn : Ok (1.3.2)
yaml : Ok (6.0.1) yaml : Ok (6.0.1)
skimage : Ok (0.21.0) skimage : Ok (0.22.0)
matplotlib : Ok (3.7.3) matplotlib : Ok (3.8.2)
plotly : Ok (5.18.0) plotly : Ok (5.18.0)
pandas : Ok (2.0.3) pandas : Ok (2.2.0)
jupyterlab : Ok (4.0.7) jupyterlab : Ok (4.0.11)
torch : Ok (2.1.0+cu121) torch : Ok (2.1.2+cpu)
torchvision : Ok (0.16.0+cu121) torchvision : Ok (0.16.2+cpu)
lightning : Ok (2.1.0) lightning : Ok (2.1.3)
``` ```
## 6 - Start Jupyter lab ## 6 - Start Jupyter lab
......