Merge branch 'master' of gricad-gitlab.univ-grenoble-alpes.fr:talks/fidle

docker/fidle_python_pip.dockerfile

 #
 #
-ARG PYTHON_VERSION=3.7
+ARG PYTHON_VERSION=3.8
 ARG docker_image_base=python:${PYTHON_VERSION}-slim
 FROM ${docker_image_base}
 
-MAINTAINER soraya.arias@inria.fr
 LABEL maintainer=soraya.arias@inria.fr
 
 # Ensure a sane environment
 ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 DEBIAN_FRONTEND=noninteractive
 
 RUN apt update --fix-missing && \
-    apt install -y --no-install-recommends apt-utils && \
-    apt install wget curl git \
-        python3-venv python3-pip && \
+    apt install -y --no-install-recommends apt-utils \
+        python3-venv  \
+        python3-pip && \
     apt -y dist-upgrade && \
-    curl -fsSL https://deb.nodesource.com/setup_lts.x |  bash - && \
-    apt install -y nodejs && \
     apt clean && \
     rm -fr /var/lib/apt/lists/*
 
 # Get Python requirement packages list
-COPY requirements.txt /root/requirements.txt
+COPY requirements-cpu.txt /root/requirements.txt
 
 # Add & Update Python tools and install requirements packages
-RUN pip install --upgrade pip && \
-    pip install -I --upgrade setuptools && \
-    pip install -r /root/requirements.txt 
+RUN python -m pip install --upgrade pip && \
+    pip install --no-cache-dir -I --upgrade setuptools && \
+    pip install --no-cache-dir -r /root/requirements.txt 
 
 # Get Fidle datasets
+# - datasets
 RUN mkdir /data && \
-    wget -c https://fidle.cnrs.fr/fidle-datasets.tar && tar -xf fidle-datasets.tar -C /data/ && \
-    rm fidle-datasets.tar
-
-# Notebooks as a volume
-RUN mkdir /notebooks/; cd /notebooks && \
-    git clone https://gricad-gitlab.univ-grenoble-alpes.fr/talks/fidle.git
+    fid  install_datasets --quiet --install_dir /data
+# - notebooks
+RUN mkdir /notebooks/ && \
+    fid install_notebooks --quiet --install_dir /notebooks
 
 # Add Jupyter configuration (no browser, listen all interfaces, ...)
 COPY jupyter_lab_config.py /root/.jupyter/jupyter_lab_config.py
-COPY fidle_env_test.py /root/fidle_env_test.py
+COPY notebook.json /root/.jupyter/nbconfig/notebook.json
 
 # Jupyter notebook uses 8888 
 EXPOSE 8888
@@ -48,13 +44,13 @@ VOLUME /notebooks
 WORKDIR /notebooks
 
 # Set a folder in the volume as Python Path
-ENV PYTHONPATH=/notebooks/fidle/:$PYTHONPATH
+ENV PYTHONPATH=/notebooks/fidle-master/:$PYTHONPATH
 
 # Force bash as the default shell (useful in the notebooks)
 ENV SHELL=/bin/bash
 
 # Set Fidle dataset directory variable
-ENV FIDLE_DATASETS_DIR=/data/fidle-datasets
+ENV FIDLE_DATASETS_DIR=/data/datasets-fidle
 
 # Run a notebook by default
 CMD ["jupyter", "lab"]

docker/jupyter_lab_config.py

@@ -900,7 +900,7 @@ c.ServerApp.quit_button = True
 
 ## The directory to use for notebooks and kernels.
 #  Default: ''
-c.ServerApp.root_dir = '/notebooks/fidle'
+c.ServerApp.root_dir = '/notebooks/fidle-master'
 
 ## The session manager class to use.
 #  Default: 'jupyter_server.services.sessions.sessionmanager.SessionManager'

docker/requirements-cpu.txt

+# ----------------------------------------------------
+#    ______ _     _ _       __      __             
+#   |  ____(_)   | | |      \ \    / /             
+#   | |__   _  __| | | ___   \ \  / /__ _ ____   __
+#   |  __| | |/ _` | |/ _ \   \ \/ / _ \ '_ \ \ / /
+#   | |    | | (_| | |  __/    \  /  __/ | | \ V / 
+#   |_|    |_|\__,_|_|\___|     \/ \___|_| |_|\_/  
+#                               Fidle pip virtual env
+# ----------------------------------------------------
+#
+# To install your Fidle env, see https://fidle.cnrs.fr/installation
+
+tensorflow_cpu>=2.7,<=2.9
+scikit-image
+scikit-learn
+matplotlib
+plotly
+barviz
+fidle
+jupyterlab
+-f https://download.pytorch.org/whl/cpu
+torch
+torchvision 

docker/requirements.txt

-tensorflow_cpu
-Scikit-image
-Scikit-learn
-Matplotlib
-Pandas
-Pandoc
-pyyaml
-torch
-torchvision
-torchaudio
-Jupyterlab