Merge branch 'dev' of gricad-gitlab.univ-grenoble-alpes.fr:talks/fidle into dev

README.md

@@ -96,7 +96,7 @@ Bash script for an OAR batch submission of an ipython code
 - **[GTSRB11](GTSRB/batch_slurm.sh)** - [SLURM batch script](GTSRB/batch_slurm.sh)  
 Bash script for a Slurm batch submission of an ipython code
 
-### Sentiment analysis with word embeddin
+### Sentiment analysis with word embedding
 - **[IMDB1](IMDB/01-One-hot-encoding.ipynb)** - [Sentiment analysis with hot-one encoding](IMDB/01-One-hot-encoding.ipynb)  
 A basic example of sentiment analysis with sparse encoding, using a dataset from Internet Movie Database (IMDB)
 - **[IMDB2](IMDB/02-Keras-embedding.ipynb)** - [Sentiment analysis with text embedding](IMDB/02-Keras-embedding.ipynb)  

docker/fidle_env_test.py

@@ -3,6 +3,7 @@
 ##
 
 import tensorflow as tf
+import torch
 import sys, os
 
 # Check data set is found
@@ -16,5 +17,12 @@ print("FIDLE_DATASETS_DIR = ", os.path.expanduser(datasets_dir))
 print("Python version = {}.{}".format(sys.version_info[0], sys.version_info[1]))
 # Check tensorflow version
 print("Tensorflow version = ", tf.__version__)
+# Obsolete command
+#print("Tensorflow GPU/CUDA available = ", tf.test.is_gpu_available())
+print("Tensorflow GPU/CUDA available = ", "true" if len(tf.config.list_physical_devices('GPU')) else "False")
+
+# Chech Pytorch version
+print("Pytorch version = ", torch.__version__)
+print("Pytorch GPU/CUDA available = ", torch.cuda.is_available())
 
 sys.exit(0)

docker/fidle_python_pip.dockerfile

 #
 #
-ARG PYTHON_VERSION=3.8
+ARG PYTHON_VERSION=3.7
 ARG docker_image_base=python:${PYTHON_VERSION}-slim
 FROM ${docker_image_base}
 
 LABEL maintainer=soraya.arias@inria.fr
 
 # Ensure a sane environment
-ENV LANG=C.UTF-8 LC_ALL=C.UTF-8 DEBIAN_FRONTEND=noninteractive
+ENV TZ=Europe/Paris LANG=C.UTF-8 LC_ALL=C.UTF-8 DEBIAN_FRONTEND=noninteractive
 
-RUN apt update --fix-missing && \
-    apt install -y apt-utils \
+RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone && \
+    apt update --fix-missing && \
+    apt install -y --no-install-recommends apt-utils &&\
+    apt install -y wget curl git \
         python3-venv python3-pip && \
     apt -y dist-upgrade && \
+    curl -fsSL https://deb.nodesource.com/setup_lts.x |  bash - && \
+    apt install -y nodejs && \
     apt clean && \
     rm -fr /var/lib/apt/lists/*
 
@@ -36,12 +40,13 @@ RUN mkdir /notebooks/ && \
     #git clone https://gricad-gitlab.univ-grenoble-alpes.fr/talks/fidle.git
 
 # Add Jupyter configuration (no browser, listen all interfaces, ...)
-#COPY jupyter_notebook_config.py /root/.jupyter/jupyter_notebook_config.py
 COPY jupyter_lab_config.py /root/.jupyter/jupyter_lab_config.py
 COPY notebook.json /root/.jupyter/nbconfig/notebook.json
 
 # Jupyter notebook uses 8888 
 EXPOSE 8888
+# Tensor board uses 6006
+EXPOSE 6006
 
 VOLUME /notebooks
 WORKDIR /notebooks
@@ -56,5 +61,4 @@ ENV SHELL=/bin/bash
 ENV FIDLE_DATASETS_DIR=/data/datasets-fidle
 
 # Run a notebook by default
-#CMD ["jupyter", "notebook", "--port=8888", "--ip=*", "--allow-root", "--notebook-dir=/notebooks/fidle-master", "--no-browser"]
 CMD ["jupyter", "lab"]

docker/jupyter_lab_config.py

@@ -902,6 +902,7 @@ c.ServerApp.quit_button = True
 #  Default: ''
 c.ServerApp.root_dir = '/notebooks/fidle-master'
 
+
 ## The session manager class to use.
 #  Default: 'jupyter_server.services.sessions.sessionmanager.SessionManager'
 # c.ServerApp.session_manager_class = 'jupyter_server.services.sessions.sessionmanager.SessionManager'

docker/jupyter_notebook_config.py

-# Configuration file for jupyter-notebook.
-
-#------------------------------------------------------------------------------
-# Application(SingletonConfigurable) configuration
-#------------------------------------------------------------------------------
-
-## Set the log level by value or name.
-c.Application.log_level = 'INFO'
-
-#------------------------------------------------------------------------------
-# NotebookApp(JupyterApp) configuration
-#------------------------------------------------------------------------------
-
-## The IP address the notebook server will listen on.
-c.NotebookApp.ip = '*'
-
-# Password to access the server
-c.Notebook.password = ''
-c.Notebook.allow_password_change = False
-
-## The directory to use for notebooks and kernels.
-c.NotebookApp.notebook_dir = '/notebooks/fidle'
-
-## Whether to open in a browser after starting. The specific browser used is
-#  platform dependent and determined by the python standard library `webbrowser`
-#  module, unless it is overridden using the --browser (NotebookApp.browser)
-#  configuration option.
-c.NotebookApp.open_browser = True
-
-## The port the notebook server will listen on.
-c.Notebook.port = 8888
-
-## Allow running as root
-c.Notebook.allow_root = True
-
-## Disable the "Quit" button on the Web UI (shuts down the server)
-c.NotebookApp.quit_button = False

docker/requirements.txt

@@ -5,4 +5,7 @@ Matplotlib
 Pandas
 Pandoc
 pyyaml
+torch
+torchvision
+torchaudio
 Jupyterlab