spam issueshttps://gricad-gitlab.univ-grenoble-alpes.fr/ttk/spam/-/issues2021-06-22T19:03:35+02:00https://gricad-gitlab.univ-grenoble-alpes.fr/ttk/spam/-/issues/212documentation: remove mpi from anaconda docs2021-06-22T19:03:35+02:00Edward Andòdocumentation: remove mpi from anaconda docsit's no longer neededit's no longer neededhttps://gricad-gitlab.univ-grenoble-alpes.fr/ttk/spam/-/issues/74Shell setup2022-12-14T11:23:59+01:00EXT Takashi MatsushimaShell setupRecommended setup:
.bashrc:
`
export spam=$HOME/bin/spam
alias activateSpam='source $spam/venv/bin/activate'
alias startSpam='cd $spam && activateSpam && ipython --profile=spam'
alias updateSpam='cd $spam && activateSpam && git pull &&...Recommended setup:
.bashrc:
`
export spam=$HOME/bin/spam
alias activateSpam='source $spam/venv/bin/activate'
alias startSpam='cd $spam && activateSpam && ipython --profile=spam'
alias updateSpam='cd $spam && activateSpam && git pull && python setup.py install'
`
.ipython/profile_spam/startup/startup.py
`
import numpy
import scipy.ndimage
import scipy.spatial
import tifffile
import matplotlib.pyplot as plt
import spam.DIC.correlate as corr
import spam.DIC.transformationOperator as transf
import spam.label.toolkit as ltk
`
agreed?https://gricad-gitlab.univ-grenoble-alpes.fr/ttk/spam/-/issues/41dependency eigen32022-12-14T11:24:05+01:00Emmanuel Roubinemmanuel.roubin@univ-grenoble-alpes.frdependency eigen3We've got a dependency with eigen3. Maybe we can get rid of it later but for the time being its needed for the global DIC.
The problem is that the default path for osx is `/usr/local/include/eigen3` and not `/usr/include/eigen3`.
What'...We've got a dependency with eigen3. Maybe we can get rid of it later but for the time being its needed for the global DIC.
The problem is that the default path for osx is `/usr/local/include/eigen3` and not `/usr/include/eigen3`.
What's the nicest way of making the `setup.py` find it ?Rémi CailletaudRémi Cailletaudhttps://gricad-gitlab.univ-grenoble-alpes.fr/ttk/spam/-/issues/22gcc warning Using deprecated NumPy API2017-09-01T13:35:47+02:00Emmanuel Roubinemmanuel.roubin@univ-grenoble-alpes.frgcc warning Using deprecated NumPy APIThere's a good old warning when DICtoolkit is compiled:
````
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-se...There's a good old warning when DICtoolkit is compiled:
````
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/eigen3 -I/home/3S-LAB/eroubin/software/ttk/RandomWaffle/venv/local/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c tools/DIC/src/DICToolkit_wrap.cpp -o build/temp.linux-x86_64-2.7/tools/DIC/src/DICToolkit_wrap.o -fopenmp -std=c++11
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
In file included from /home/3S-LAB/eroubin/software/ttk/RandomWaffle/venv/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
from /home/3S-LAB/eroubin/software/ttk/RandomWaffle/venv/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /home/3S-LAB/eroubin/software/ttk/RandomWaffle/venv/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from tools/DIC/src/DICToolkit_wrap.cpp:3047:
/home/3S-LAB/eroubin/software/ttk/RandomWaffle/venv/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
```
Not sure it is very important but sure is annoying... We looked it up a while ago with Eddy without any success.https://gricad-gitlab.univ-grenoble-alpes.fr/ttk/spam/-/issues/19Platform2017-09-28T17:38:47+02:00Rémi CailletaudPlatformIt works fine on Linux (and OSX ?). Should we put some energy for Windows. The sooner the better if we want to.It works fine on Linux (and OSX ?). Should we put some energy for Windows. The sooner the better if we want to.Rémi CailletaudRémi Cailletaudhttps://gricad-gitlab.univ-grenoble-alpes.fr/ttk/spam/-/issues/16Build Failed #8562017-07-25T21:54:02+02:00Emmanuel Roubinemmanuel.roubin@univ-grenoble-alpes.frBuild Failed #856https://gricad-gitlab.univ-grenoble-alpes.fr/ttk/RandomWaffle/-/jobs/856
This time I'm not sure its me https://gricad-gitlab.univ-grenoble-alpes.fr/ttk/RandomWaffle/-/jobs/856
This time I'm not sure its me Emmanuel Roubinemmanuel.roubin@univ-grenoble-alpes.frEmmanuel Roubinemmanuel.roubin@univ-grenoble-alpes.frhttps://gricad-gitlab.univ-grenoble-alpes.fr/ttk/spam/-/issues/15Build Failed #8502017-07-25T17:00:28+02:00Rémi CailletaudBuild Failed #850Mouahahahahaha continuous integration [first blame](https://gricad-gitlab.univ-grenoble-alpes.fr/ttk/RandomWaffle/-/jobs/850) for Manu !
Mouahahahahaha continuous integration [first blame](https://gricad-gitlab.univ-grenoble-alpes.fr/ttk/RandomWaffle/-/jobs/850) for Manu !