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Commit d57e6bdd authored by Edward Andò's avatar Edward Andò
Browse files

Finally, after six months... Merge branch 'splitScripts'

parents aaf87e58 17206f39
Pipeline #66247 passed with stages
in 26 minutes and 51 seconds
......@@ -12,13 +12,10 @@ exclude_lines =
def create2Patche*
def create8Patche*
raise InputError
if verbose:
[run]
omit =
*/__init__.py
*/*Toolkit.py
*/_*
*/plotting/*
*optionsParser.py
......
......@@ -43,6 +43,7 @@ pages:
- coverage run -m pytest
- coverage combine && coverage report
- coverage html
#- pytest --cov-report html --cov=spam tools/tests/ ## This is with pytest-cov
- mv coverage public
artifacts:
paths:
......
......@@ -39,6 +39,7 @@ extensions = [
'sphinx.ext.viewcode',
'sphinx.ext.napoleon',
'sphinx_gallery.gen_gallery',
'sphinx.ext.graphviz'
]
sphinx_gallery_conf = {
'backreferences_dir': 'gen_modules/backreferences',
......

digraph G {
rankdir = "TB";
RES [label="compute im1(Φ)-im2", shape=parallelogram, margin=-3, target="_top"];
// scripts
EREG [label="spam-ereg", color="#c46747", fillcolor="#FFEAE6", style="bold, filled", shape=ellipse, href="#eye-registration-script-spam-ereg"];
DEF [label="spam-deformImage", color="#c46747", fillcolor="#FFEAE6", style="bold, filled", shape=ellipse, href="#pixel-search-script-spam-pixelsearch", target="_top"];
REG [label="spam-reg", color="#c46747", fillcolor="#FFEAE6", style="bold, filled", shape=ellipse, href="#registration-script-spam-reg", target="_top"];
PS [label="spam-pixelSearch", color="#c46747", fillcolor="#FFEAE6", style="bold, filled", shape=ellipse, href="#pixel-search-script-spam-pixelsearch", target="_top"];
FILT [label="spam-filterPhiField", color="#c46747", fillcolor="#FFEAE6", style="bold, filled", shape=ellipse, href="#filtering-script-spam-filterphifield", target="_top"];
LDIC [label="spam-ldic", color="#c46747", fillcolor="#FFEAE6", style="bold, filled", shape=ellipse, href="#regular-grid-local-dic-script-spam-ldic", target="_top"];
//PASS [label="spam-passPhiField", color="#c46747", fillcolor="#FFEAE6", style="bold, filled", shape=ellipse, href="#regular-grid-local-dic-script-spam-ldic", target="_top"];
STR [label="spam-regularStrain", color="#c46747", fillcolor="#FFEAE6", style="bold, filled", shape=ellipse, href="#regular-strain-script-spam-regularstrain", target="_top"];
// questions
QEREG [shape=box, label="misaligned images?"];
QREG [shape=box, label="homogeneous transformation?"];
QPS [shape=box, label="inhomogeneous transformation?"];
QLDIC [shape=box, label="not much happening?"];
QFILT [shape=box, label="filter Φ field?"];
// arrows from questions to scripts
RES -> QEREG;
QEREG -> EREG [label="Yes",color="#3BB300"];
QEREG -> QREG [label="No", color=red];
QREG -> REG [label="Yes",color="#3BB300"];
QREG -> QPS [label="No", color=red];
QPS -> PS [label="Yes",color="#3BB300"];
QPS -> QLDIC[label="No", color=red];
QLDIC -> LDIC [label="Yes",color="#3BB300"];
QFILT -> FILT [label="Yes",color="#3BB300"];
QFILT -> STR [label="No",color=red];
// results
// ereg
EREGR [label="keep Φ", shape=note, margin=-3];
EREG -> EREGR;
//EREGR -> RES;
EREGR -> DEF;
DEF -> RES;
EREGR -> REG[style=dashed, color="#c46747"];
// reg
REGR [label="keep Φ", shape=note, margin=-3];
REG -> REGR[label="Converged?"];
//REGR -> RES;
REGR -> DEF;
//DEF -> RES;
REGR -> PS[style=dashed, color="#c46747"];
REGR -> LDIC[style=dashed, color="#c46747"];
// pixel search
PSR [label="keep Φ field", shape=note, margin=0];
PS -> PSR[label="High CC?"];
//PSR -> RES;
PSR -> DEF//[constraint=false];
//DEF -> RES;
PSR -> QFILT;
PSR -> LDIC[style=dashed, color="#c46747"];
// filter ps
// ldic
LDICR [label="keep Φ field", shape=note, margin=0];
LDIC -> LDICR;
LDICR -> DEF//[constraint=false];
//DEF -> RES;
// filter ldic
LDICR -> QFILT;
FILT -> STR;
}
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