Merge branch 'master' of https://gricad-gitlab.univ-grenoble-alpes.fr/python-uga/training-hpc

ipynb/21_pres_algos_dtw_cort.ipynb

@@ -2,7 +2,11 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
    "source": [
     "A running example\n",
     "================"
@@ -30,7 +34,11 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
    "source": [
     "Dynamic Time Wrapping \n",
     "------------------------------------\n",
@@ -43,17 +51,16 @@
     "\n",
     "What do we compute: \n",
     "-------------------------------\n",
-    "The transformation (with minimal cost) to transform one serie in the other one. \n",
-    "\n",
-    "\n",
-    "Example of what is computed\n",
-    "-------------------------------------------\n",
-    "\n"
+    "The transformation (with minimal cost) to transform one serie in the other one. "
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
    "source": [
     "Example of result of dtw :\n",
     "-----------------------------------\n",
@@ -65,7 +72,11 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
    "source": [
     "\n",
     "Idea of the algorithm\n",
@@ -92,7 +103,11 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
    "source": [
     "(image from https://riptutorial.com/dynamic-programming/example/25780/introduction-to-dynamic-time-warping\n",
     "\n",
@@ -110,7 +125,11 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
    "source": [
     "Easy enough to implement:\n",
     "----------------------------------------"
@@ -159,7 +178,11 @@
   {
    "cell_type": "code",
    "execution_count": 5,
-   "metadata": {},
+   "metadata": {
+    "slideshow": {
+     "slide_type": "-"
+    }
+   },
    "outputs": [
     {
      "name": "stdout",
@@ -198,7 +221,11 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
    "source": [
     "\n",
     "Cort \n",
@@ -223,9 +250,13 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
    "source": [
-    "What do we compute:\n",
+    "How do we compute:\n",
     "------------------------------\n",
     "\n",
     "$$ \\begin{eqnarray}\n",
@@ -238,7 +269,11 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "slideshow": {
+     "slide_type": "slide"
+    }
+   },
    "source": [
     "Easy enough to implement:\n",
     "---------------------------------------"
@@ -296,6 +331,7 @@
   }
  ],
  "metadata": {
+  "celltoolbar": "Slideshow",
   "kernelspec": {
    "display_name": "Python 3",
    "language": "python",

requirements.txt

 # to be used with:
 # conda install --file requirements.txt
 # utilities
-python==3.7
+python==3.7.3
 ipython
 spyder
 jupyter
+nbconvert>=5.5
 invoke
 # base numerics
 numpy
@@ -13,7 +14,7 @@ matplotlib
 pandas
 h5py
 #vizu
-pyviz
+# pyviz  # (not available in conda!)
 # wrapper
 cffi
 # accelerators

todo.md

@@ -2,18 +2,11 @@
 
 - [?] Make a page in our website with the presentations
 
-- [Franck] Split 21_pres_algos_dtw_cort.ipynb in more than one page!
-
 - [Franck, Loic] 30_wrapping.ipynb (que retenir des exemples?)
 
 - [Pierre, Franck] 31_accelerators.ipynb (que retenir des exemples?)
 
-- [Pierre] Pythran without Transonic, (loop and vec) for Transonic and Numba
-
 - [Pierre, Franck] parallel (presentation + examples)
 
 - [Franck, Raphaël, Cyrille] présentation 41_cluster.ipynb (Charliecloud pour
   Cyrille)
-
-- [Franck] Cleanup
-  - old_snippet and delete this directory