From 29301936e1df6fd8a8eda6a0b6aa14b8e5cdc65d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Franck=20P=C3=A9rignon?= <franck.perignon@imag.fr>
Date: Wed, 4 May 2016 16:17:05 +0200
Subject: [PATCH] Gitlab setup - renaming (2)

---
 .gitignore                                          |   9 +++++++--
 HySoP/CMakeLists.txt => CMakeLists.txt              |   0
 {HySoP/DoxyConf => DoxyConf}/hysop.doxyfile.in      |   0
 {HySoP/DoxyConf => DoxyConf}/mainpage.doxygen       |   0
 HySoP/.gitignore                                    |   5 -----
 HySoP/README                                        |   0
 HySoP/HySoPConfig.cmake.in => HySoPConfig.cmake.in  |   0
 ...gVersion.cmake.in => HySoPConfigVersion.cmake.in |   0
 HySoP/INSTALL => INSTALL                            |   0
 ...change_groups_xz_slice => change_groups_xz_slice |   0
 {HySoP/cmake => cmake}/FindFFTW.cmake               |   0
 {HySoP/cmake => cmake}/FindPythonFull.cmake         |   0
 {HySoP/cmake => cmake}/FindPythonModule.cmake       |   0
 {HySoP/cmake => cmake}/FindSWIG.cmake               |   0
 {HySoP/cmake => cmake}/GoogleTestHelper.cmake       |   0
 {HySoP/cmake => cmake}/HySoPInstallSetup.cmake      |   0
 {HySoP/cmake => cmake}/HySoPTests.cmake             |   0
 {HySoP/cmake => cmake}/HysopVersion.cmake           |   0
 {HySoP/cmake => cmake}/LibFindMacros.cmake          |   0
 {HySoP/cmake => cmake}/MyTools.cmake                |   0
 {HySoP/cmake => cmake}/OutOfSourceBuild.cmake       |   0
 {HySoP/cmake => cmake}/PythonInstallSetup.cmake     |   0
 {HySoP/cmake => cmake}/cmake_uninstall.cmake.in     |   0
 {HySoP/cmake => cmake}/explore_python_config.py     |   0
 {HySoP/cmake => cmake}/fake/__init__.py             |   0
 {HySoP/cmake => cmake}/fake/setup.py                |   0
 {HySoP/cmake => cmake}/find_python_install.py       |   0
 {HySoP/cmake => cmake}/fortran_utils.cmake          |   0
 HySoP/config.hpp.cmake => config.hpp.cmake          |   0
 docs/CMake                                          |   1 -
 {HySoP/hysop => hysop}/.f2py_f2cmap                 |   0
 {HySoP/hysop => hysop}/.pyflymakerc                 |   0
 {HySoP/hysop => hysop}/__init__.py.in               |   0
 {HySoP/hysop => hysop}/constants.py                 |   0
 {HySoP/hysop => hysop}/default_methods.py           |   0
 {HySoP/hysop => hysop}/domain/__init__.py           |   0
 {HySoP/hysop => hysop}/domain/box.py                |   0
 {HySoP/hysop => hysop}/domain/control_box.py        |   0
 {HySoP/hysop => hysop}/domain/domain.py             |   0
 {HySoP/hysop => hysop}/domain/mesh.py               |   0
 {HySoP/hysop => hysop}/domain/porous.py             |   0
 {HySoP/hysop => hysop}/domain/submesh.py            |   0
 {HySoP/hysop => hysop}/domain/subsets.py            |   0
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 {HySoP/hysop => hysop}/domain/tests/test_box.py     |   0
 .../domain/tests/test_control_box.py                |   0
 {HySoP/hysop => hysop}/domain/tests/test_mesh.py    |   0
 {HySoP/hysop => hysop}/domain/tests/test_porous.py  |   0
 .../domain/tests/test_regular_subset.py             |   0
 {HySoP/hysop => hysop}/domain/tests/test_submesh.py |   0
 {HySoP/hysop => hysop}/domain/tests/test_subset.py  |   0
 {HySoP/hysop => hysop}/f2hysop.pyf.in               |   0
 {HySoP/hysop => hysop}/f2py/fftw2py.f90             |   0
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 {HySoP/hysop => hysop}/f2py/scales2py.f90           |   0
 {HySoP/hysop => hysop}/f2py/scales2py.pyf           |   0
 {HySoP/hysop => hysop}/fakef2py/__init__.py         |   0
 {HySoP/hysop => hysop}/fakef2py/fftw2py/__init__.py |   0
 .../hysop => hysop}/fakef2py/scales2py/__init__.py  |   0
 {HySoP/hysop => hysop}/fields/__init__.py           |   0
 {HySoP/hysop => hysop}/fields/continuous.py         |   0
 {HySoP/hysop => hysop}/fields/discrete.py           |   0
 {HySoP/hysop => hysop}/fields/tests/__init__.py     |   0
 .../hysop => hysop}/fields/tests/func_for_tests.py  |   0
 {HySoP/hysop => hysop}/fields/tests/test_field.py   |   0
 .../hysop => hysop}/fields/tests/test_variable.py   |   0
 {HySoP/hysop => hysop}/fields/variable_parameter.py |   0
 {HySoP/hysop => hysop}/fortran/arnoldi2py.pyf       |   0
 {HySoP/hysop => hysop}/fortran/template.f95         |   0
 {HySoP/hysop => hysop}/fortran/template.pyf         |   0
 {HySoP/hysop => hysop}/gpu/QtRendering.py           |   0
 {HySoP/hysop => hysop}/gpu/__init__.py              |   0
 .../gpu/cl_src/advection/basic_rk2.cl               |   0
 .../gpu/cl_src/advection/basic_rk2_noVec.cl         |   0
 .../gpu/cl_src/advection/basic_rk4.cl               |   0
 .../gpu/cl_src/advection/basic_rk4_noVec.cl         |   0
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 .../gpu/cl_src/advection/velocity_cache.cl          |   0
 .../gpu/cl_src/advection/velocity_cache_noVec.cl    |   0
 {HySoP/hysop => hysop}/gpu/cl_src/common.cl         |   0
 .../hysop => hysop}/gpu/cl_src/kernels/advection.cl |   0
 .../gpu/cl_src/kernels/advection_and_remeshing.cl   |   0
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 {HySoP/hysop => hysop}/gpu/cl_src/kernels/copy.cl   |   0
 .../gpu/cl_src/kernels/copy_locMem.cl               |   0
 .../gpu/cl_src/kernels/copy_noVec.cl                |   0
 .../hysop => hysop}/gpu/cl_src/kernels/diffusion.cl |   0
 .../gpu/cl_src/kernels/fine_to_coarse_filter.cl     |   0
 .../gpu/cl_src/kernels/multiphase_baroclinic_rhs.cl |   0
 .../hysop => hysop}/gpu/cl_src/kernels/remeshing.cl |   0
 .../gpu/cl_src/kernels/remeshing_noVec.cl           |   0
 .../hysop => hysop}/gpu/cl_src/kernels/rendering.cl |   0
 .../gpu/cl_src/kernels/transpose_xy.cl              |   0
 .../gpu/cl_src/kernels/transpose_xy_noVec.cl        |   0
 .../gpu/cl_src/kernels/transpose_xz.cl              |   0
 .../gpu/cl_src/kernels/transpose_xz_noVec.cl        |   0
 .../gpu/cl_src/kernels/transpose_xz_slice.cl        |   0
 .../gpu/cl_src/kernels/transpose_xz_slice_noVec.cl  |   0
 .../hysop => hysop}/gpu/cl_src/remeshing/basic.cl   |   0
 .../gpu/cl_src/remeshing/basic_noVec.cl             |   0
 .../gpu/cl_src/remeshing/comm_basic_noVec.cl        |   0
 .../hysop => hysop}/gpu/cl_src/remeshing/private.cl |   0
 .../gpu/cl_src/remeshing/private_noVec.cl           |   0
 .../hysop => hysop}/gpu/cl_src/remeshing/weights.cl |   0
 .../gpu/cl_src/remeshing/weights_builtin.cl         |   0
 .../gpu/cl_src/remeshing/weights_noVec.cl           |   0
 .../gpu/cl_src/remeshing/weights_noVec_builtin.cl   |   0
 {HySoP/hysop => hysop}/gpu/config_cayman.py         |   0
 {HySoP/hysop => hysop}/gpu/config_default.py        |   0
 {HySoP/hysop => hysop}/gpu/config_k20m.py           |   0
 {HySoP/hysop => hysop}/gpu/gpu_diffusion.py         |   0
 {HySoP/hysop => hysop}/gpu/gpu_discrete.py          |   0
 {HySoP/hysop => hysop}/gpu/gpu_kernel.py            |   0
 .../gpu/gpu_multiphase_baroclinic_rhs.py            |   0
 .../gpu/gpu_multiresolution_filter.py               |   0
 {HySoP/hysop => hysop}/gpu/gpu_operator.py          |   0
 .../hysop => hysop}/gpu/gpu_particle_advection.py   |   0
 {HySoP/hysop => hysop}/gpu/gpu_transfer.py          |   0
 {HySoP/hysop => hysop}/gpu/kernel_benchmark.py      |   0
 .../gpu/multi_gpu_particle_advection.py             |   0
 {HySoP/hysop => hysop}/gpu/tests/__init__.py        |   0
 .../gpu/tests/test_advection_nullVelocity.py        |   0
 .../gpu/tests/test_advection_randomVelocity.py      |   0
 {HySoP/hysop => hysop}/gpu/tests/test_copy.py       |   0
 .../gpu/tests/test_gpu_multiresolution_filter.py    |   0
 .../gpu/tests/test_multiphase_baroclinic.py         |   0
 .../gpu/tests/test_opencl_environment.py            |   0
 .../hysop => hysop}/gpu/tests/test_transposition.py |   0
 {HySoP/hysop => hysop}/gpu/tools.py                 |   0
 {HySoP/hysop => hysop}/gpu/visu/__init__.py         |   0
 {HySoP/hysop => hysop}/gpu/visu/gpu-mc.cl           |   0
 {HySoP/hysop => hysop}/gpu/visu/marchingcube.py     |   0
 {HySoP/hysop => hysop}/methods.py                   |   0
 {HySoP/hysop => hysop}/methods_keys.py              |   0
 {HySoP/hysop => hysop}/mpi/__init__.py              |   0
 {HySoP/hysop => hysop}/mpi/bridge.py                |   0
 {HySoP/hysop => hysop}/mpi/bridge_inter.py          |   0
 {HySoP/hysop => hysop}/mpi/bridge_overlap.py        |   0
 {HySoP/hysop => hysop}/mpi/main_var.py              |   0
 {HySoP/hysop => hysop}/mpi/tests/__init__.py        |   0
 {HySoP/hysop => hysop}/mpi/tests/test_bridge.py     |   0
 {HySoP/hysop => hysop}/mpi/tests/test_topology.py   |   0
 {HySoP/hysop => hysop}/mpi/tests/utils.py           |   0
 {HySoP/hysop => hysop}/mpi/topology.py              |   0
 {HySoP/hysop => hysop}/numerics/__init__.py         |   0
 .../numerics/differential_operations.py             |   0
 .../hysop => hysop}/numerics/finite_differences.py  |   0
 .../numerics/integrators/__init__.py                |   0
 .../hysop => hysop}/numerics/integrators/euler.py   |   0
 .../numerics/integrators/odesolver.py               |   0
 .../numerics/integrators/runge_kutta2.py            |   0
 .../numerics/integrators/runge_kutta3.py            |   0
 .../numerics/integrators/runge_kutta4.py            |   0
 {HySoP/hysop => hysop}/numerics/interpolation.py    |   0
 {HySoP/hysop => hysop}/numerics/method.py           |   0
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 {HySoP/hysop => hysop}/numerics/update_ghosts.py    |   0
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 {HySoP/hysop => hysop}/problem/transport.py         |   0
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 {HySoP/hysop => hysop}/tools/numpywrappers.py       |   0
 {HySoP/hysop => hysop}/tools/parameters.py          |   0
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 {HySoP/hysop => hysop}/tools/tests/test_profiler.py |   0
 HySoP/opencl_explore.py => opencl_explore.py        |   0
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 rename {HySoP/src => src}/hysop++/tests/testPlanner/main.cpp (100%)
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 rename {HySoP/src => src}/hysop++/tests/testPolynoms/main.cpp (100%)
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 rename {HySoP/src => src}/hysop++/tests/testPolynoms/testPolynoms.h (100%)
 rename {HySoP/src => src}/main/initFieldsTests.f90 (100%)
 rename {HySoP/src => src}/main/main.cxx (100%)
 rename {HySoP/src => src}/main/main.f90 (100%)
 rename {HySoP/src => src}/scalesInterface/layout/cart_mesh_tools.f90 (100%)
 rename {HySoP/src => src}/scalesInterface/layout/cart_topology.f90 (100%)
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 rename {HySoP/src => src}/scalesInterface/output/vtkxml_bin.f90 (100%)
 rename {HySoP/src => src}/scalesInterface/particles/advec.f90 (100%)
 rename {HySoP/src => src}/scalesInterface/particles/advecX.f90 (100%)
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 rename {HySoP/src => src}/scalesInterface/precision_tools.f90 (100%)
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 rename {HySoP/swig => swig}/cpp2hysop.i (100%)
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 rename {HySoP/swig => swig}/hysop++/fft.i (100%)
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diff --git a/.gitignore b/.gitignore
index 9a8bdc053..dce974e0c 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,5 +1,10 @@
 *.pyc
-HySoP/hysop/__init__.py
+hysop/__init__.py
 .#*
-HySoP/hysop/.pyflymakercc
+hysop/.pyflymakercc
 .DS_Store
+build/
+debug/
+release/
+.cache/
+hysop/f2hysop.pyf
diff --git a/HySoP/CMakeLists.txt b/CMakeLists.txt
similarity index 100%
rename from HySoP/CMakeLists.txt
rename to CMakeLists.txt
diff --git a/HySoP/DoxyConf/hysop.doxyfile.in b/DoxyConf/hysop.doxyfile.in
similarity index 100%
rename from HySoP/DoxyConf/hysop.doxyfile.in
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diff --git a/HySoP/DoxyConf/mainpage.doxygen b/DoxyConf/mainpage.doxygen
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diff --git a/HySoP/.gitignore b/HySoP/.gitignore
deleted file mode 100644
index c4bde9e9b..000000000
--- a/HySoP/.gitignore
+++ /dev/null
@@ -1,5 +0,0 @@
-build/
-debug/
-release/
-.cache/
-hysop/f2hysop.pyf
diff --git a/HySoP/README b/HySoP/README
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index e69de29bb..000000000
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similarity index 100%
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deleted file mode 120000
index 2a271a9f0..000000000
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@@ -1 +0,0 @@
-../CMake
\ No newline at end of file
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diff --git a/HySoP/src/hysop++/tests/testPolynoms/CMakeLists.txt b/src/hysop++/tests/testPolynoms/CMakeLists.txt
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diff --git a/HySoP/src/main/initFieldsTests.f90 b/src/main/initFieldsTests.f90
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diff --git a/HySoP/src/scalesInterface/layout/cart_mesh_tools.f90 b/src/scalesInterface/layout/cart_mesh_tools.f90
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diff --git a/HySoP/src/scalesInterface/particles/advec_line/advecX_line.f90 b/src/scalesInterface/particles/advec_line/advecX_line.f90
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diff --git a/HySoP/src/scalesInterface/particles/advec_line/advecZ_line.f90 b/src/scalesInterface/particles/advec_line/advecZ_line.f90
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diff --git a/HySoP/src/scalesInterface/particles/advec_remesh_Mprime.f90 b/src/scalesInterface/particles/advec_remesh_Mprime.f90
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diff --git a/HySoP/src/scalesInterface/particles/advec_remesh_lambda.f90 b/src/scalesInterface/particles/advec_remesh_lambda.f90
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diff --git a/HySoP/src/scalesInterface/structure_tools.f90 b/src/scalesInterface/structure_tools.f90
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diff --git a/HySoP/swig/cpp2hysop.i b/swig/cpp2hysop.i
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diff --git a/HySoP/swig/fftw/fftw.i b/swig/fftw/fftw.i
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diff --git a/HySoP/swig/hysop++/domain.i b/swig/hysop++/domain.i
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diff --git a/HySoP/swig/start.i b/swig/start.i
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rename to swig/start.i
-- 
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