1. 01 Jul, 2021 1 commit
  2. 24 Jul, 2020 1 commit
    • François Lavoué's avatar
      Change default template to v8a (2 horizontal layers). · ffc6608b
      François Lavoué authored
      ---
      
        On branch master
       	modified:   .gitignore
       	modified:   04_make_SEM46_input_files.sh
       	modified:   05_make_acqui_file.sh
       	modified:   06_make_source_file.sh
       	modified:   07_check_domain_decomposition.sh
       	modified:   11_run_meshcreationP4_orthorombic.sh
       	modified:   12_run_projectionP4_orthorombic.sh
       	modified:   13_run_sem46P4_orthorombic.sh
       	modified:   20_make_src_rec_vtk.sh
       	modified:   21_plot_VTK_mesh_with_paraview.py
       	modified:   22_plot_VTS_model_with_paraview.py
       	modified:   30_process_and_plot_SEM46_simulation_results_for_QC.ipynb
       	modified:   README.md
       	modified:   build_simple_synthetic_model_2D.in
       	modified:   build_simple_synthetic_model_3D.in
       	modified:   extend_2D_model_to_3D.in
       	deleted:    figs/simple_synthetic_models/simple_synthetic_model_2D_appli-FL-dams_v0-no-water.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_2D_appli-FL-dams_v1.2-Vs-200-ms-in-water.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v8a_2-horizontal-layers.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_2D_Russian-model2_2-horizontal-layers_and_dipping_fault.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v8b_2-horizontal-layers_and_dipping_fault.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_2D_Russian-model1_2-horizontal-layers_and_rectangular-anomaly.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v9_2-horizontal-layers_and_rectangular-anomaly.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_3D_Russian-model1_2-horizontal-layers_and_rectangular-anomaly.pdf -> figs/simple_synthetic_models/simple_synthetic_model_3D_v9_2-horizontal-layers_and_rectangular-anomaly.pdf
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       	new file:   input_files/SEM46_input_files/acquis/acqui_1-src_450-recs_drec-10m_id
       	deleted:    input_files/SEM46_input_files/acquis/acqui_1-src_xy-src-250-20m_1x93-recs_drec-5m
       	deleted:    input_files/SEM46_input_files/acquis/acqui_1-src_xy-src-250-20m_1x93-recs_drec-5m_id
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       	new file:   input_files/SEM46_input_files/input_run_simulation_in_simple_synthetic_model_v8a_2-horizontal-layers/extra_mesh_info.in
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       	deleted:    input_files/SEM46_input_files/models/simple_synthetic_model_2D_appli-FL-dams_*
       	new file:   input_files/SEM46_input_files/models/simple_synthetic_model_3D_v8a_2-horizontal-layers/.readme.txt
       	deleted:    input_files/SEM46_input_files/sources/fricker_10Hz_nt10001_dt0.1ms.bin
       	deleted:    input_files/SEM46_input_files/sources/fricker_10Hz_nt15001_dt0.0666ms.bin
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       	modified:   input_files/SEM46_input_files/templates/11_run_meshcreationP4_orthorombic.sh
       	modified:   input_files/SEM46_input_files/templates/12_run_projectionP4_orthorombic.sh
       	modified:   input_files/SEM46_input_files/templates/mesh_input_namelist
       	modified:   input_files/SEM46_input_files/templates/projection_input_namelist
       	deleted:    input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_appli-FL-dams_v0-no-water.in
       	deleted:    input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_appli-FL-dams_v1.2-Vs-200ms-in-water.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v5_3-horizontal-layers_and_dipping_interface.in
       	new file:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v8a_2-horizontal-layers.in
       	renamed:    input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_Russian-model2_2-horizontal-layers_and_dipping_fault.in -> input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v8b_2-horizontal-layers_and_dipping_fault.in
       	renamed:    input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_Russian-model1_2-horizontal-layers_and_rectangular-anomaly.in -> input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v9_2-horizontal-layers_and_rectangular-anomaly.in
       	renamed:    input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_3D_Russian-model1_2-horizontal-layers_and_rectangular-anomaly.in -> input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_3D_v9_2-horizontal-layers_and_rectangular-anomaly.in
       	deleted:    results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/
       	deleted:    results/output_run_dam_simulation_*
      ffc6608b
  3. 17 Apr, 2020 1 commit
  4. 06 Feb, 2020 2 commits
    • Francois Lavoue's avatar
      Merge 'appli_FL_dams' into 'master'. · c0098bc7
      Francois Lavoue authored
      Changes since last master version include:
      
      - more templates and resulting figures.
      
      - an option for hard-coded tuning in build_simple_models_*.py.
      
      - checking domain decomposition in 07_*.sh.
      
      - plotting models and wavefields in 30_*.ipynb.
      
      - how to run a function in parallel in a notebook (30_*.ipynb).
      
      - how to convert a notebook (30_*.ipynb) into a script.
      
      ---
      
        On branch master
       	modified:   .gitignore
       	modified:   04_make_SEM46_input_files.sh
       	modified:   05_make_acqui_file.sh
       	modified:   06_make_source_file.sh
       	new file:   07_check_domain_decomposition.sh
       	modified:   10_link_SEM46_inputs.sh
       	typechange: 11_run_meshcreationP4_orthorombic.sh
       	typechange: 12_run_projectionP4_orthorombic.sh
       	typechange: 13_run_sem46P4_orthorombic.sh
       	modified:   14_pack_output_SEM46.sh
       	modified:   20_make_src_rec_vtk.sh
       	modified:   21_plot_VTK_mesh_with_paraview.py
       	modified:   22_plot_VTS_model_with_paraview.py
       	modified:   30_process_and_plot_SEM46_simulation_results_for_QC.ipynb
       	modified:   README.md
       	modified:   build_simple_synthetic_model_2D.in
       	modified:   build_simple_synthetic_model_3D.in
       	modified:   extend_2D_model_to_3D.in
       	renamed:    figs/simple_synthetic_models/Russian-model1_2-horizontal-layers_and_rectangular-anomaly_2D.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_Russian-model1_2-horizontal-layers_and_rectangular-anomaly.pdf
       	renamed:    figs/simple_synthetic_models/Russian-model2_2-horizontal-layers_and_dipping_fault.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_Russian-model2_2-horizontal-layers_and_dipping_fault.pdf
       	new file:   figs/simple_synthetic_models/simple_synthetic_model_2D_appli-FL-dams_v0-no-water.pdf
       	new file:   figs/simple_synthetic_models/simple_synthetic_model_2D_appli-FL-dams_v1.2-Vs-200-ms-in-water.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v0a_complete-template.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v0a_complete-template.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v0b_complete-template.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v0b_complete-template.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v0c_complete-template_with-gradients.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v0c_complete-template_with-gradients.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v1_3-horizontal-layers.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v1_3-horizontal-layers.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v2a_3-horizontal-layers_and_shallow-rectangular-anomaly.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v2a_3-horizontal-layers_and_shallow-rectangular-anomaly.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v2b_3-horizontal-layers_and_shallow-gaussian-anomaly.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v2b_3-horizontal-layers_and_shallow-gaussian-anomaly.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v3_3-horizontal-layers_and_positive-topo.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v3_3-horizontal-layers_and_positive-topo.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v4a_3-horizontal-layers_and_anticlinal.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v4a_3-horizontal-layers_and_anticlinal.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v4b_3-horizontal-layers_and_synclinal.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v4b_3-horizontal-layers_and_synclinal.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v5_3-horizontal-layers_and_dipping_interface.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v5_3-horizontal-layers_and_dipping_interface.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v6_3-horizontal-layers_with_gradients_and_dipping_interfaces.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v6_3-horizontal-layers_with_gradients_and_dipping_interfaces.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v7_3-horizontal-layers_and_deep-vertical-intrusion.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v7_3-horizontal-layers_and_deep-vertical-intrusion.pdf
       	renamed:    figs/simple_synthetic_models/Russian-model1_2-horizontal-layers_and_rectangular-anomaly_3D.pdf -> figs/simple_synthetic_models/simple_synthetic_model_3D_Russian-model1_2-horizontal-layers_and_rectangular-anomaly.pdf
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       	modified:   input_files/SEM46_input_files/templates/projection_input_namelist
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       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/mesh1.png
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/mesh2.png
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/plot_traces-vs-offset_y-comp_norm-trace-by-trace.pdf
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/plot_wiggles.png
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/source.pdf
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/spectra.pdf
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/vp_2D.png
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/vp_3D.png
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/job_info/.readme.txt
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/model_cart/.readme.txt
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/model_gll/.readme.txt
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/seismograms/.readme.txt
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/snapshots/.readme.txt
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/vtk_files/.readme.txt
       	modified:   scripts/build_simple_synthetic_model_2D.py
       	modified:   scripts/extend_2D_model_to_3D.py
      c0098bc7
    • Francois Lavoue's avatar
      Update dam simulation inputs and resulting figures for benchmarking. · d39bc2c2
      Francois Lavoue authored
      This should now be merged into the master branch and become the new
      reference version of the package.
      
      ---
      
        On branch appli_FL_dams
       	modified:   20_make_src_rec_vtk.sh
       	modified:   21_plot_VTK_mesh_with_paraview.py
       	modified:   22_plot_VTS_model_with_paraview.py
       	modified:   30_process_and_plot_SEM46_simulation_results_for_QC.ipynb
       	modified:   build_simple_synthetic_model_2D.in
       	renamed:    figs/simple_synthetic_models/Russian-model1_2-horizontal-layers_and_rectangular-anomaly_2D.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_Russian-model1_2-horizontal-layers_and_rectangular-anomaly.pdf
       	renamed:    figs/simple_synthetic_models/Russian-model2_2-horizontal-layers_and_dipping_fault.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_Russian-model2_2-horizontal-layers_and_dipping_fault.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_2D_appli-FL-dams_v1.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_appli-FL-dams_v1.2-Vs-200-ms-in-water.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v0a_complete-template.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v0a_complete-template.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v0b_complete-template.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v0b_complete-template.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v0c_complete-template_with-gradients.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v0c_complete-template_with-gradients.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v1_3-horizontal-layers.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v1_3-horizontal-layers.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v2a_3-horizontal-layers_and_shallow-rectangular-anomaly.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v2a_3-horizontal-layers_and_shallow-rectangular-anomaly.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v2b_3-horizontal-layers_and_shallow-gaussian-anomaly.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v2b_3-horizontal-layers_and_shallow-gaussian-anomaly.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v3_3-horizontal-layers_and_positive-topo.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v3_3-horizontal-layers_and_positive-topo.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v4a_3-horizontal-layers_and_anticlinal.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v4a_3-horizontal-layers_and_anticlinal.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v4b_3-horizontal-layers_and_synclinal.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v4b_3-horizontal-layers_and_synclinal.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v5_3-horizontal-layers_and_dipping_interface.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v5_3-horizontal-layers_and_dipping_interface.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v6_3-horizontal-layers_with_gradients_and_dipping_interfaces.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v6_3-horizontal-layers_with_gradients_and_dipping_interfaces.pdf
       	renamed:    figs/simple_synthetic_models/simple_synthetic_model_v7_3-horizontal-layers_and_deep-vertical-intrusion.pdf -> figs/simple_synthetic_models/simple_synthetic_model_2D_v7_3-horizontal-layers_and_deep-vertical-intrusion.pdf
       	renamed:    figs/simple_synthetic_models/Russian-model1_2-horizontal-layers_and_rectangular-anomaly_3D.pdf -> figs/simple_synthetic_models/simple_synthetic_model_3D_Russian-model1_2-horizontal-layers_and_rectangular-anomaly.pdf
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/11_run_meshcreationP4_orthorombic.sh
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/12_run_projectionP4_orthorombic.sh
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/13_run_sem46P4_orthorombic.sh
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/acqui
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/acqui_id
       	renamed:    input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_appli-FL-dams_v1.in -> input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/build_simple_synthetic_model_2D.in
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/build_simple_synthetic_model_3D.in
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/exotic_QC_input_namelist
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/extend_2D_model_to_3D.in
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/extra_mesh_info.in
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/fsource
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/mesh_input_namelist
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/projection_input_namelist
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/sem_input_namelist
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1.2-Vs-200ms-in-water/topo
       	new file:   input_files/SEM46_input_files/models/simple_synthetic_model_2D_appli-FL-dams_v0-no-water/.readme.txt
       	new file:   input_files/SEM46_input_files/models/simple_synthetic_model_2D_appli-FL-dams_v1.2-Vs-200ms-in-water/.readme.txt
       	new file:   input_files/SEM46_input_files/models/simple_synthetic_model_3D_appli-FL-dams_v0-no-water/.readme.txt
       	new file:   input_files/SEM46_input_files/models/simple_synthetic_model_3D_appli-FL-dams_v1.2-Vs-200ms-in-water/.readme.txt
       	new file:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_appli-FL-dams_v1.2-Vs-200ms-in-water.in
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/.readme.txt
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/figs/Uy_field_45_0.3-s.png
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/figs/acqui.pdf
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/figs/mesh1.png
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/figs/mesh2.png
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/figs/plot_traces-vs-offset_y-comp_norm-trace-by-trace.pdf
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/figs/plot_wiggles.png
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/figs/source.pdf
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/figs/spectra.pdf
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/figs/vp_2D.png
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/figs/vp_3D.png
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/job_info/.readme.txt
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/model_cart/.readme.txt
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/model_gll/.readme.txt
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/seismograms/.readme.txt
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/snapshots/.readme.txt
       	new file:   results/output_run_dam_simulation_v0-no-water_xy-src-300x250m/vtk_files/.readme.txt
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/.readme.txt
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/Uy_field_90_0.3-s.png
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/acqui.pdf
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/mesh1.png
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/mesh2.png
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/plot_traces-vs-offset_y-comp_norm-trace-by-trace.pdf
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/plot_wiggles.png
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/source.pdf
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/spectra.pdf
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/vp_2D.png
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/figs/vp_3D.png
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/job_info/.readme.txt
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/model_cart/.readme.txt
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/model_gll/.readme.txt
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/seismograms/.readme.txt
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/snapshots/.readme.txt
       	new file:   results/output_run_dam_simulation_v1.2-Vs-200ms-in-water_xy-src-300x250m/vtk_files/.readme.txt
      d39bc2c2
  5. 17 Jan, 2020 4 commits
    • Francois Lavoue's avatar
      Adapt Python notebook for plotting wavefields in zy-plane. · 12124a23
      Francois Lavoue authored
      ---
      
        On branch appli_FL_dams
       	modified:   30_process_and_plot_SEM46_simulation_results_for_QC.ipynb
      12124a23
    • Francois Lavoue's avatar
      Add script to check domain decomposition. · 1c58e7c3
      Francois Lavoue authored
      Helpful for editing sem_input_namelist.
      
      ---
      
        On branch appli_FL_dams
       	new file:   07_check_domain_decomposition.sh
      1c58e7c3
    • Francois Lavoue's avatar
      Update Python notebook for processing results. · bb9def33
      Francois Lavoue authored
      - Filter traces (in parallel).
      
      - Plot wavefields.
      
      This should be merged to the `master` branch.
      
      ---
      
        On branch appli_FL_dams
       	modified:   30_process_and_plot_SEM46_simulation_results_for_QC.ipynb
       	modified:   README.md
      bb9def33
    • Francois Lavoue's avatar
      Update v0-no-water case. · 4d019101
      Francois Lavoue authored
      In particular, put the source in the middle of the dam, i.e. on the
      zx vertical cross-section extracted by SEM46 for wavefield snapshots.
      
      ---
      
        On branch appli_FL_dams
       	modified:   05_make_acqui_file.sh
       	modified:   20_make_src_rec_vtk.sh
       	modified:   21_plot_VTK_mesh_with_paraview.py
       	modified:   22_plot_VTS_model_with_paraview.py
       	new file:   input_files/SEM46_input_files/acquis/acqui_1-src_xy-src-250-20m_1x93-recs_drec-5m
       	new file:   input_files/SEM46_input_files/acquis/acqui_1-src_xy-src-250-20m_1x93-recs_drec-5m_id
       	renamed:    input_files/SEM46_input_files/acquis/acqui_1-src_93x7-recs_drec-5x25m -> input_files/SEM46_input_files/acquis/acqui_1-src_xy-src-300x20m_93x7-recs_drec-5x25m
       	renamed:    input_files/SEM46_input_files/acquis/acqui_1-src_93x7-recs_drec-5x25m_id -> input_files/SEM46_input_files/acquis/acqui_1-src_xy-src-300x20m_93x7-recs_drec-5x25m_id
       	new file:   input_files/SEM46_input_files/acquis/acqui_1-src_xy-src-300x250m_93x7-recs_drec-5x25m
       	new file:   input_files/SEM46_input_files/acquis/acqui_1-src_xy-src-300x250m_93x7-recs_drec-5x25m_id
       	modified:   input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/acqui
       	modified:   input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/acqui_id
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/qp_cart
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/qs_cart
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/rho_cart
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/vp_cart
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/vs_cart
      4d019101
  6. 10 Jan, 2020 3 commits
    • Francois Lavoue's avatar
      Automate legend in Paraview plots. · 5cfd2d5b
      Francois Lavoue authored
      This also enables to plot wavefields instead of models.
      
      ---
      
        On branch appli_FL_dams
       	modified:   22_plot_VTS_model_with_paraview.py
      5cfd2d5b
    • Francois Lavoue's avatar
      Adapt Python Paraview plotting scripts to dam simulations. · 466c1b5f
      Francois Lavoue authored
      (v0-no-water)
      
      ---
      
        On branch appli_FL_dams
       	modified:   .gitignore
       	modified:   20_make_src_rec_vtk.sh
       	modified:   21_plot_VTK_mesh_with_paraview.py
       	modified:   22_plot_VTS_model_with_paraview.py
      466c1b5f
    • Francois Lavoue's avatar
      Change input run dir for dam simulation (no water case). · 7bb4b0af
      Francois Lavoue authored
      ---
      
        On branch appli_FL_dams
       	modified:   04_make_SEM46_input_files.sh
       	modified:   05_make_acqui_file.sh
       	modified:   06_make_source_file.sh
       	modified:   11_run_meshcreationP4_orthorombic.sh
       	modified:   12_run_projectionP4_orthorombic.sh
       	modified:   13_run_sem46P4_orthorombic.sh
       	modified:   build_simple_synthetic_model_2D.in
       	modified:   extend_2D_model_to_3D.in
       	new file:   figs/simple_synthetic_models/simple_synthetic_model_2D_appli-FL-dams_v0-no-water.pdf
       	renamed:    input_files/SEM46_input_files/input_run_dam_simulation_v1/11_run_meshcreationP4_orthorombic.sh -> input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/11_run_meshcreationP4_orthorombic.sh
       	renamed:    input_files/SEM46_input_files/input_run_dam_simulation_v1/12_run_projectionP4_orthorombic.sh -> input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/12_run_projectionP4_orthorombic.sh
       	renamed:    input_files/SEM46_input_files/input_run_dam_simulation_v1/13_run_sem46P4_orthorombic.sh -> input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/13_run_sem46P4_orthorombic.sh
       	renamed:    input_files/SEM46_input_files/input_run_dam_simulation_v1/acqui -> input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/acqui
       	renamed:    input_files/SEM46_input_files/input_run_dam_simulation_v1/acqui_id -> input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/acqui_id
       	renamed:    input_files/SEM46_input_files/input_run_dam_simulation_v1/build_simple_synthetic_model_2D.in -> input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/build_simple_synthetic_model_2D.in
       	renamed:    input_files/SEM46_input_files/input_run_dam_simulation_v1/build_simple_synthetic_model_3D.in -> input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/build_simple_synthetic_model_3D.in
       	renamed:    input_files/SEM46_input_files/input_run_dam_simulation_v1/exotic_QC_input_namelist -> input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/exotic_QC_input_namelist
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/extend_2D_model_to_3D.in
       	renamed:    input_files/SEM46_input_files/input_run_dam_simulation_v1/extra_mesh_info.in -> input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/extra_mesh_info.in
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/fsource
       	renamed:    input_files/SEM46_input_files/input_run_dam_simulation_v1/mesh_input_namelist -> input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/mesh_input_namelist
       	renamed:    input_files/SEM46_input_files/input_run_dam_simulation_v1/projection_input_namelist -> input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/projection_input_namelist
       	renamed:    input_files/SEM46_input_files/input_run_dam_simulation_v1/sem_input_namelist -> input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/sem_input_namelist
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v0-no-water/topo
       	deleted:    input_files/SEM46_input_files/input_run_dam_simulation_v1/extend_2D_model_to_3D.in
       	deleted:    input_files/SEM46_input_files/input_run_dam_simulation_v1/fsource
       	deleted:    input_files/SEM46_input_files/input_run_dam_simulation_v1/topo
       	new file:   input_files/SEM46_input_files/sources/fricker_10Hz_nt15001_dt0.0666ms.bin
       	new file:   input_files/SEM46_input_files/sources/fricker_10Hz_nt30001_dt0.0333ms.bin
       	modified:   input_files/SEM46_input_files/templates/12_run_projectionP4_orthorombic.sh
       	modified:   input_files/SEM46_input_files/templates/projection_input_namelist
       	modified:   input_files/SEM46_input_files/templates/sem_input_namelist
       	new file:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_appli-FL-dams_v0-no-water.in
       	modified:   scripts/build_simple_synthetic_model_2D.py
       	modified:   scripts/extend_2D_model_to_3D.py
      7bb4b0af
  7. 08 Jan, 2020 6 commits
    • Francois Lavoue's avatar
      Add input run dir for dam simulation. · bfc733ce
      Francois Lavoue authored
      (except heavy model files that can be generated using the scripts)
      
      ---
      
        On branch appli_FL_dams
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/11_run_meshcreationP4_orthorombic.sh
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/12_run_projectionP4_orthorombic.sh
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/13_run_sem46P4_orthorombic.sh
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/acqui
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/acqui_id
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/build_simple_synthetic_model_2D.in
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/build_simple_synthetic_model_3D.in
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/exotic_QC_input_namelist
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/extend_2D_model_to_3D.in
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/extra_mesh_info.in
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/fsource
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/mesh_input_namelist
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/projection_input_namelist
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/sem_input_namelist
       	new file:   input_files/SEM46_input_files/input_run_dam_simulation_v1/topo
      bfc733ce
    • Francois Lavoue's avatar
      Adapt to dam simulations. · 194283ec
      Francois Lavoue authored
      ---
      
        On branch appli_FL_dams
       	typechange: 11_run_meshcreationP4_orthorombic.sh
       	typechange: 12_run_projectionP4_orthorombic.sh
       	typechange: 13_run_sem46P4_orthorombic.sh
       	modified:   20_make_src_rec_vtk.sh
       	modified:   21_plot_VTK_mesh_with_paraview.py
       	modified:   extend_2D_model_to_3D.in
       	modified:   figs/simple_synthetic_models/simple_synthetic_model_2D_appli-FL-dams_v1.pdf
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_appli-FL-dams_v1.in
       	modified:   scripts/build_simple_synthetic_model_2D.py
      194283ec
    • Francois Lavoue's avatar
      Update 10_link_SEM46_inputs.sh. · 4b206f05
      Francois Lavoue authored
      Now link to submission scripts from input run dir, because they are specific to each case.
      
      ---
      
        On branch appli_FL_dams
       	modified:   10_link_SEM46_inputs.sh
      4b206f05
    • Francois Lavoue's avatar
      Put output source file in `sources` subfolder rather than in SEM46 `input_run` dir. · 689166be
      Francois Lavoue authored
      ---
      
        On branch appli_FL_dams
       	modified:   06_make_source_file.sh
       	new file:   input_files/SEM46_input_files/sources/fricker_10Hz_nt10001_dt0.1ms.bin
      689166be
    • Francois Lavoue's avatar
      Adapt acqui to dam simulations + add option to reverse x and y in order to... · 0e82ffd8
      Francois Lavoue authored
      Adapt acqui to dam simulations + add option to reverse x and y in order to align acquisition lines in desired direction.
      
      ---
      
        On branch appli_FL_dams
       	modified:   05_make_acqui_file.sh
       	new file:   input_files/SEM46_input_files/acquis/acqui_1-src_93x7-recs_drec-5x25m
       	new file:   input_files/SEM46_input_files/acquis/acqui_1-src_93x7-recs_drec-5x25m_id
      0e82ffd8
    • Francois Lavoue's avatar
      Adapt SEM input files to dam simulations + correctly read gradient lines in... · 7d3cf6eb
      Francois Lavoue authored
      Adapt SEM input files to dam simulations + correctly read gradient lines in build_simple_synthetic_model_2D.in.
      
      + copy submission scripts from template dir.
      
      This bug correction should be merged or cherry-picked in the master branch.
      
      ---
      
        On branch appli_FL_dams
       	modified:   04_make_SEM46_input_files.sh
       	new file:   input_files/SEM46_input_files/templates/11_run_meshcreationP4_orthorombic.sh
       	new file:   input_files/SEM46_input_files/templates/12_run_projectionP4_orthorombic.sh
       	new file:   input_files/SEM46_input_files/templates/13_run_sem46P4_orthorombic.sh
      7d3cf6eb
  8. 07 Jan, 2020 4 commits
    • Francois Lavoue's avatar
      Correct the definition of the topography. · 682a8836
      Francois Lavoue authored
      - Topography is now defined as the first vertical point where model (Vp)
        values are not NaNs (/!\ cell point, not edge), for each x-point.
      
      + Plot topography for check.
      
      ---
      
        On branch appli_FL_dams
       	modified:   figs/simple_synthetic_models/simple_synthetic_model_2D_appli-FL-dams_v1.pdf
       	modified:   scripts/build_simple_synthetic_model_2D.py
      682a8836
    • Francois Lavoue's avatar
      Design dam geometry. · 36712ff0
      Francois Lavoue authored
      Generate an input file and modify the script build_simple_synthetic_model_2D.py:
      
      - add an option to make triangular bumps instead of Gaussian ones.
      
      - add an option for some case-specific hard-coded tuning (in this case,
        to avoid putting water on one side of the dam).
      
      Still to do:
      
      - correct the definition of the topography, by considering the first
        non-NaN value instead of the first interface (which may not be the
        shallowest one in case of dipping interfaces and/or bumps).
      
      - plot topography.
      
        On branch appli_FL_dams
       	modified:   build_simple_synthetic_model_2D.in
       	new file:   figs/simple_synthetic_models/simple_synthetic_model_2D_appli-FL-dams_v1.pdf
       	new file:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_appli-FL-dams_v1.in
       	deleted:    input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_appli-FL-trains_1-layer-with-gradient_v1.in
       	deleted:    input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_appli-FL-trains_1-layer-with-gradient_v2.in
       	modified:   scripts/build_simple_synthetic_model_2D.py
      36712ff0
    • Francois Lavoue's avatar
      Init. branch for simulations on a dam. · cd97e24c
      Francois Lavoue authored
      Forked from branch `appli_FL_trains`, commit 832aee78.
      
      ---
      
        On branch appli_FL_dams
       	deleted:    40_train_simulations.ipynb
       	modified:   README.md
      cd97e24c
    • Francois Lavoue's avatar
      Update branch appli_FL_trains. · 832aee78
      Francois Lavoue authored
      ---
      
        On branch appli_FL_trains
       	modified:   20_make_src_rec_vtk.sh
       	modified:   21_plot_VTK_mesh_with_paraview.py
       	modified:   30_process_and_plot_SEM46_simulation_results_for_QC.ipynb
       	modified:   40_train_simulations.ipynb
       	modified:   README.md
       	modified:   build_simple_synthetic_model_2D.in
       	deleted:    build_simple_synthetic_model_3D.in
       	modified:   extend_2D_model_to_3D.in
       	new file:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_appli-FL-trains_1-layer-with-gradient_v1.in
       	new file:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_appli-FL-trains_1-layer-with-gradient_v2.in
       	deleted:    results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/acqui.pdf
       	deleted:    results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/compare_seismic_mode1.pdf
       	deleted:    results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/group_dispersion_curves_vg-fta.png
       	deleted:    results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/line1001_z_norm-global_x1000.pdf
       	deleted:    results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/mesh.png
       	deleted:    results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/plot_wiggle.pdf
       	deleted:    results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/source.pdf
       	deleted:    results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/spectra.pdf
       	deleted:    results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/structure.png
       	deleted:    results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/vp.png
      832aee78
  9. 02 Oct, 2019 2 commits
    • Francois Lavoue's avatar
      Update processing notebook (make it slightly more general). · 8b947309
      Francois Lavoue authored
      ---
      
        On branch master
       	modified:   30_process_and_plot_SEM46_simulation_results_for_QC.ipynb
       	modified:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/acqui.pdf
       	modified:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/compare_seismic_mode1.pdf
       	deleted:    results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/line1001_z_norm-global_x1000.pdf
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/plot_traces-vs-offset_line1001_z-comp_norm-global_x1000.pdf
       	deleted:    results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/plot_wiggle.pdf
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/plot_wiggles.pdf
       	modified:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/source.pdf
       	modified:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/spectra.pdf
      8b947309
    • Francois Lavoue's avatar
      Merge master into appli_FL_trains. · 8020528d
      Francois Lavoue authored
      Main master changes since fork:
      
      dcef7ec7 Compute and plot group velocity dispersion curves.
      cb06d024 Replace NaNs above topography by vertically-invariant extrapolation of surface values.
      11128e81 Add gradients in simple synthetic models.
      
      ---
      
        On branch appli_FL_trains
       	modified:   30_process_and_plot_SEM46_simulation_results_for_QC.ipynb
       	modified:   README.md
       	modified:   build_simple_synthetic_model_2D.in
       	modified:   build_simple_synthetic_model_3D.in
       	modified:   extend_2D_model_to_3D.in
       	renamed:    figs/simple_synthetic_models/Russian-model1_2-horizontal-layers_and_rectangular-anomaly.pdf -> figs/simple_synthetic_models/Russian-model1_2-horizontal-layers_and_rectangular-anomaly_2D.pdf
       	new file:   figs/simple_synthetic_models/Russian-model1_2-horizontal-layers_and_rectangular-anomaly_3D.pdf
       	new file:   figs/simple_synthetic_models/simple_synthetic_model_v0c_complete-template_with-gradients.pdf
       	new file:   figs/simple_synthetic_models/simple_synthetic_model_v6_3-horizontal-layers_with_gradients_and_dipping_interfaces.pdf
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_Russian-model1_2-horizontal-layers_and_rectangular-anomaly.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_Russian-model2_2-horizontal-layers_and_dipping_fault.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v0a_complete-template.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v0b_complete-template.in
       	new file:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v0c_complete-template-with-gradients.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v1_3-horizontal-layers.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v2a_3-horizontal-layers_and_shallow-rectangular-anomaly.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v2b_3-horizontal-layers_and_shallow-gaussian-anomaly.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v3_3-horizontal-layers_and_positive-topo.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v4a_3-horizontal-layers_and_anticlinal.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v4b_3-horizontal-layers_and_synclinal.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v5_3-horizontal-layers_and_dipping_interface.in
       	new file:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v6_3-horizontal-layers_with_gradients_and_dipping_interface.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v7_3-horizontal-layers_and_deep-vertical-intrusion.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_3D_Russian-model1_2-horizontal-layers_and_rectangular-anomaly.in
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/group_dispersion_curves_vg-fta.png
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/spectra.pdf
       	modified:   scripts/build_simple_synthetic_model_2D.py
       	modified:   scripts/build_simple_synthetic_model_3D.py
       	modified:   scripts/extend_2D_model_to_3D.py
      8020528d
  10. 24 Sep, 2019 3 commits
    • Francois Lavoue's avatar
      Add a few comments and remove vg_fta temp files. · 7beec61b
      Francois Lavoue authored
      ---
      
        On branch master
       	modified:   30_process_and_plot_SEM46_simulation_results_for_QC.ipynb
       	modified:   scripts/build_simple_synthetic_model_2D.py
       	modified:   scripts/build_simple_synthetic_model_3D.py
      7beec61b
    • Francois Lavoue's avatar
      Compute and plot group velocity dispersion curves. · dcef7ec7
      Francois Lavoue authored
      Using either Laurent Stehly's pycorr_disp module or the vg_fta executable
      from the MSNoise package.
      
      ---
      
        On branch master
       	modified:   30_process_and_plot_SEM46_simulation_results_for_QC.ipynb
       	modified:   README.md
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/group_dispersion_curves_vg-fta.png
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/spectra.pdf
      dcef7ec7
    • Francois Lavoue's avatar
      Replace NaNs above topography by vertically-invariant extrapolation of surface values. · cb06d024
      Francois Lavoue authored
      (as needed by SEM46, which will then truncate the model according to topography)
      
      ---
      
        On branch master
       	modified:   README.md
       	modified:   build_simple_synthetic_model_3D.in
       	modified:   extend_2D_model_to_3D.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v0c_complete-template-with-gradients.in
       	modified:   scripts/build_simple_synthetic_model_3D.py
       	modified:   scripts/extend_2D_model_to_3D.py
      cb06d024
  11. 23 Sep, 2019 1 commit
    • Francois Lavoue's avatar
      Add gradients in simple synthetic models. · 11128e81
      Francois Lavoue authored
      + figures of slices for 3D models.
      + update readme
      
      ---
      
        On branch master
       	modified:   README.md
       	modified:   build_simple_synthetic_model_2D.in
       	renamed:    figs/simple_synthetic_models/Russian-model1_2-horizontal-layers_and_rectangular-anomaly.pdf -> figs/simple_synthetic_models/Russian-model1_2-horizontal-layers_and_rectangular-anomaly_2D.pdf
       	new file:   figs/simple_synthetic_models/Russian-model1_2-horizontal-layers_and_rectangular-anomaly_3D.pdf
       	new file:   figs/simple_synthetic_models/simple_synthetic_model_v0c_complete-template_with-gradients.pdf
       	new file:   figs/simple_synthetic_models/simple_synthetic_model_v6_3-horizontal-layers_with_gradients_and_dipping_interfaces.pdf
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_Russian-model1_2-horizontal-layers_and_rectangular-anomaly.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_Russian-model2_2-horizontal-layers_and_dipping_fault.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v0a_complete-template.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v0b_complete-template.in
       	new file:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v0c_complete-template-with-gradients.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v1_3-horizontal-layers.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v2a_3-horizontal-layers_and_shallow-rectangular-anomaly.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v2b_3-horizontal-layers_and_shallow-gaussian-anomaly.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v3_3-horizontal-layers_and_positive-topo.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v4a_3-horizontal-layers_and_anticlinal.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v4b_3-horizontal-layers_and_synclinal.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v5_3-horizontal-layers_and_dipping_interface.in
       	new file:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v6_3-horizontal-layers_with_gradients_and_dipping_interface.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v7_3-horizontal-layers_and_deep-vertical-intrusion.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_3D_Russian-model1_2-horizontal-layers_and_rectangular-anomaly.in
       	modified:   scripts/build_simple_synthetic_model_2D.py
       	modified:   scripts/build_simple_synthetic_model_3D.py
      11128e81
  12. 16 Sep, 2019 1 commit
    • Francois Lavoue's avatar
      Move example figures of simple synthetic models to subfolder. · 37e4906f
      Francois Lavoue authored
      ---
      
        On branch master
       	renamed:    figs/Russian-model1_2-horizontal-layers_and_rectangular-anomaly.pdf -> figs/simple_synthetic_models/Russian-model1_2-horizontal-layers_and_rectangular-anomaly.pdf
       	renamed:    figs/Russian-model2_2-horizontal-layers_and_dipping_fault.pdf -> figs/simple_synthetic_models/Russian-model2_2-horizontal-layers_and_dipping_fault.pdf
       	renamed:    figs/simple_synthetic_model_v0a_complete-template.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v0a_complete-template.pdf
       	renamed:    figs/simple_synthetic_model_v0b_complete-template.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v0b_complete-template.pdf
       	renamed:    figs/simple_synthetic_model_v1_3-horizontal-layers.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v1_3-horizontal-layers.pdf
       	renamed:    figs/simple_synthetic_model_v2a_3-horizontal-layers_and_shallow-rectangular-anomaly.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v2a_3-horizontal-layers_and_shallow-rectangular-anomaly.pdf
       	renamed:    figs/simple_synthetic_model_v2b_3-horizontal-layers_and_shallow-gaussian-anomaly.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v2b_3-horizontal-layers_and_shallow-gaussian-anomaly.pdf
       	renamed:    figs/simple_synthetic_model_v3_3-horizontal-layers_and_positive-topo.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v3_3-horizontal-layers_and_positive-topo.pdf
       	renamed:    figs/simple_synthetic_model_v4a_3-horizontal-layers_and_anticlinal.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v4a_3-horizontal-layers_and_anticlinal.pdf
       	renamed:    figs/simple_synthetic_model_v4b_3-horizontal-layers_and_synclinal.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v4b_3-horizontal-layers_and_synclinal.pdf
       	renamed:    figs/simple_synthetic_model_v5_3-horizontal-layers_and_dipping_interface.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v5_3-horizontal-layers_and_dipping_interface.pdf
       	renamed:    figs/simple_synthetic_model_v7_3-horizontal-layers_and_deep-vertical-intrusion.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v7_3-horizontal-layers_and_deep-vertical-intrusion.pdf
      37e4906f
  13. 01 Aug, 2019 2 commits
    • Francois Lavoue's avatar
      Init branch for trains simulations. · 9ff3d55f
      Francois Lavoue authored
      Goal: better understand the seismic signals generated by trains.
      
      In collaboration with Olivier Coutant, Pierre Boue and Florent Brenguier.
      
      ---
      
        On branch appli_FL_trains
       	new file:   40_train_simulations.ipynb
       	modified:   README.md
      9ff3d55f
    • Francois Lavoue's avatar
      Minor update: re-organize figs and make output dir if it does not exist. · ff177da2
      Francois Lavoue authored
      ---
      
        On branch master
       	modified:   14_pack_output_SEM46.sh
       	renamed:    figs/Russian-model1_2-horizontal-layers_and_rectangular-anomaly.pdf -> figs/simple_synthetic_models/Russian-model1_2-horizontal-layers_and_rectangular-anomaly.pdf
       	renamed:    figs/Russian-model2_2-horizontal-layers_and_dipping_fault.pdf -> figs/simple_synthetic_models/Russian-model2_2-horizontal-layers_and_dipping_fault.pdf
       	renamed:    figs/simple_synthetic_model_v0a_complete-template.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v0a_complete-template.pdf
       	renamed:    figs/simple_synthetic_model_v0b_complete-template.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v0b_complete-template.pdf
       	renamed:    figs/simple_synthetic_model_v1_3-horizontal-layers.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v1_3-horizontal-layers.pdf
       	renamed:    figs/simple_synthetic_model_v2a_3-horizontal-layers_and_shallow-rectangular-anomaly.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v2a_3-horizontal-layers_and_shallow-rectangular-anomaly.pdf
       	renamed:    figs/simple_synthetic_model_v2b_3-horizontal-layers_and_shallow-gaussian-anomaly.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v2b_3-horizontal-layers_and_shallow-gaussian-anomaly.pdf
       	renamed:    figs/simple_synthetic_model_v3_3-horizontal-layers_and_positive-topo.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v3_3-horizontal-layers_and_positive-topo.pdf
       	renamed:    figs/simple_synthetic_model_v4a_3-horizontal-layers_and_anticlinal.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v4a_3-horizontal-layers_and_anticlinal.pdf
       	renamed:    figs/simple_synthetic_model_v4b_3-horizontal-layers_and_synclinal.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v4b_3-horizontal-layers_and_synclinal.pdf
       	renamed:    figs/simple_synthetic_model_v5_3-horizontal-layers_and_dipping_interface.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v5_3-horizontal-layers_and_dipping_interface.pdf
       	renamed:    figs/simple_synthetic_model_v7_3-horizontal-layers_and_deep-vertical-intrusion.pdf -> figs/simple_synthetic_models/simple_synthetic_model_v7_3-horizontal-layers_and_deep-vertical-intrusion.pdf
      ff177da2
  14. 25 Jul, 2019 2 commits
    • Franc,ois Lavoue's avatar
      Update 30*.ipynb and add example figure for seismic section vs offset. · 529bfa96
      Franc,ois Lavoue authored
      ---
      
        On branch master
       	modified:   30_process_and_plot_SEM46_simulation_results_for_QC.ipynb
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/line1001_z_norm-global_x1000.pdf
      529bfa96
    • François Lavoué's avatar
      Make it work from scratch. · e313616d
      François Lavoué authored
      - add template exotic_QC_input_namelist.
      - add makedirs when needed.
      - update readme with required Python environment.
      
      ---
      
        On branch master
       	modified:   .gitignore
       	modified:   04_make_SEM46_input_files.sh
       	modified:   05_make_acqui_file.sh
       	modified:   06_make_source_file.sh
       	modified:   README.md
       	new file:   input_files/SEM46_input_files/templates/exotic_QC_input_namelist
       	modified:   scripts/build_simple_synthetic_model_2D.py
       	modified:   scripts/build_simple_synthetic_model_3D.py
       	modified:   scripts/extend_2D_model_to_3D.py
      e313616d
  15. 24 Jul, 2019 1 commit
    • François Lavoué's avatar
      Add example figures generated by 2*_plot*with_paraview.py and 30_process_and_plot_*.ipynb · 8bbd6787
      François Lavoué authored
      ---
      
        On branch master
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/acqui.pdf
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/compare_seismic_mode1.pdf
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/mesh.png
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/plot_wiggle.pdf
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/source.pdf
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/structure.png
       	new file:   results/output_run_Russian-model2_2-horizontal-layers_and_dipping_fault/figs/vp.png
      8bbd6787
  16. 22 Jul, 2019 4 commits
    • François Lavoué's avatar
      Add .gitignore · 6f774960
      François Lavoué authored
      ---
      
        On branch master
       	new file:   .gitignore
      6f774960
    • François Lavoué's avatar
      Avoid broken lines in SEM46 *input_namelist files. · 7091753f
      François Lavoué authored
      (seiscope_pytools.reads.read_simulation_parameters does not like that)
      
      ---
      
        On branch master
       	modified:   input_files/SEM46_input_files/templates/mesh_input_namelist
      7091753f
    • François Lavoué's avatar
      Add Python notebook to process and plot SEM46 simulation results. · 5ad247d2
      François Lavoué authored
      - This notebook is mostly for development and QC: it reads and plots all
        simulations parameters and outputs for a first check and visualization.
      
      - Meanwhile, it also provides examples of how to process and plot SEM46
        results, using in particular the Seiscope PyTools (branch dev_FL,
        which you should have in your $PYTHONPATH).
      
      - I like doing this in a notebook in order to check and tune things
        interactively, but each cell of the notebook could also be exported
        to a script, or even as functions in a module if needed.
      
      ---
      
        On branch master
       	new file:   30_process_and_plot_SEM46_simulation_results_for_QC.ipynb
       	modified:   README.md
      5ad247d2
    • François Lavoué's avatar
      Update Python Paraview scripts. · f4d0beed
      François Lavoué authored
      Specify camera placement in user parameters, such as to make the rest of
      the script more generic.
      
      To do:
      
      - add slicing in 22_plot_VTS_model_with_paraview.py to visualize model interior.
      
      - add 23_plot_snapshot_movie_with_paraview.py.
      
      ---
      
        On branch master
       	modified:   21_plot_VTK_mesh_with_paraview.py
       	modified:   22_plot_VTS_model_with_paraview.py
      f4d0beed
  17. 21 Jul, 2019 2 commits
    • François Lavoué's avatar
      Generate a build_simple_synthetic_model_3D.in when extending a 2D model to 3D. · 2a89cccb
      François Lavoué authored
      NB: this build_simple_synthetic_model_3D.in will not be entirely
      functional for use by build_simple_synthetic_model_3D.py, but it
      contains the 3D domain size and min/max properties, which is
      enough to generate SEM46 input files.
      
      ---
      
        On branch master
       	modified:   scripts/extend_2D_model_to_3D.py
      2a89cccb
    • François Lavoué's avatar
      Update build_simple_synthetic_model_*D.in templates. · 56afeb00
      François Lavoué authored
      (remove unused parameters)
      
      ---
      
        On branch master
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_Russian-model1_2-horizontal-layers_and_rectangular-anomaly.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_Russian-model2_2-horizontal-layers_and_dipping_fault.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v0a_complete-template.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v0b_complete-template.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v1_3-horizontal-layers.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v2a_3-horizontal-layers_and_shallow-rectangular-anomaly.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v2b_3-horizontal-layers_and_shallow-gaussian-anomaly.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v3_3-horizontal-layers_and_positive-topo.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v4a_3-horizontal-layers_and_anticlinal.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v4b_3-horizontal-layers_and_synclinal.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v5_3-horizontal-layers_and_dipping_interface.in
       	modified:   input_files/build_simple_synthetic_models.ins/build_simple_synthetic_model_2D_v7_3-horizontal-layers_and_deep-vertical-intrusion.in
      56afeb00