Fixed clean function when there are multiple file with the same name only...

Fixed clean function when there are multiple file with the same name only diffrent in the extensions

nbproject/private/private.properties

-application.args=-c /home/tien/Test_demo/xml/2978-3-319-20608-0_Book_PrintPDF.pdf -d -noclean
+application.args=-c /home/tien/Corpus/testxml/Untitled
 compile.on.save=true
 do.depend=false
 do.jar=true

nbproject/private/private.xml

@@ -2,10 +2,6 @@
 <project-private xmlns="http://www.netbeans.org/ns/project-private/1">
     <editor-bookmarks xmlns="http://www.netbeans.org/ns/editor-bookmarks/2" lastBookmarkId="0"/>
     <open-files xmlns="http://www.netbeans.org/ns/projectui-open-files/2">
-        <group>
-            <file>file:/home/tien/NetBeansProjects/ScigenChecker_Local/src/fr/imag/forge/scidetect/Checker/Utils/DistancesSet.java</file>
-            <file>file:/home/tien/NetBeansProjects/ScigenChecker_Local/src/fr/imag/forge/scidetect/Logger/Log.java</file>
-            <file>file:/home/tien/NetBeansProjects/ScigenChecker_Local/src/fr/imag/forge/scidetect/scigenchecker_local/ScigenChecker_Local.java</file>
-        </group>
+        <group/>
     </open-files>
 </project-private>

nbproject/project.properties

@@ -76,7 +76,7 @@ manifest.custom.permissions=
 manifest.file=manifest.mf
 meta.inf.dir=${src.dir}/META-INF
 mkdist.disabled=false
-platform.active=JDK_1.6
+platform.active=JDK_1.6oracle
 project.license=gpl30
 run.classpath=\
     ${javac.classpath}:\

src/fr/imag/forge/scidetect/Checker/Cleaner.java

@@ -38,9 +38,9 @@ public class Cleaner {
                     clean(listOfFile[j].getPath());
                 } else if (listOfFile[j].getName().endsWith(".pdf") || listOfFile[j].getName().endsWith(".xml") || listOfFile[j].getName().endsWith(".xtx")) {
                     String originalname = listOfFile[j].getName();
-                    String originalnamewoextension = listOfFile[j].getName().substring(0, listOfFile[j].getName().lastIndexOf("."));
+                    String originalnamewoextension = originalname.substring(0, originalname.lastIndexOf("."));
                     for (int i = 0; i < listOfFile.length; i++) {
-                        if (listOfFile[i].getName().contains(originalnamewoextension) && !listOfFile[i].getName().contains(originalname)&&!listOfFile[i].getName().contains(".pdf.xtx")) {
+                        if (listOfFile[i].getName().endsWith(".txt")&&listOfFile[i].getName().contains(originalnamewoextension) && !listOfFile[i].getName().contains(originalname)&&!listOfFile[i].getName().contains(".pdf.xtx")) {
                             listOfFile[i].delete();
                         }
                     }
@@ -52,7 +52,7 @@ public class Cleaner {
             File[] listOfFile = folder.getParentFile().listFiles();
             String originalnamewoextension = folder.getName().substring(0, folder.getName().lastIndexOf("."));
             for (int i = 0; i < listOfFile.length; i++) {
-                if (listOfFile[i].getName().contains(originalnamewoextension) && !listOfFile[i].getName().contains(originalname)&&!listOfFile[i].getName().contains(".pdf.xtx")) {
+                if (listOfFile[i].getName().endsWith(".txt")&&listOfFile[i].getName().contains(originalnamewoextension) && !listOfFile[i].getName().contains(originalname)&&!listOfFile[i].getName().contains(".pdf.xtx")) {
                     listOfFile[i].delete();
                 }
             }