Add new and improved version

scidetect/README.TXT

+========================
+BUILD OUTPUT DESCRIPTION
+========================
+
+When you build an Java application project that has a main class, the IDE
+automatically copies all of the JAR
+files on the projects classpath to your projects dist/lib folder. The IDE
+also adds each of the JAR files to the Class-Path element in the application
+JAR files manifest file (MANIFEST.MF).
+
+To run the project from the command line, go to the dist folder and
+type the following:
+
+java -jar "ScigenChecker_Local.jar" 
+
+To distribute this project, zip up the dist folder (including the lib folder)
+and distribute the ZIP file.
+
+Notes:
+
+* If two JAR files on the project classpath have the same name, only the first
+JAR file is copied to the lib folder.
+* Only JAR files are copied to the lib folder.
+If the classpath contains other types of files or folders, these files (folders)
+are not copied.
+* If a library on the projects classpath also has a Class-Path element
+specified in the manifest,the content of the Class-Path element has to be on
+the projects runtime path.
+* To set a main class in a standard Java project, right-click the project node
+in the Projects window and choose Properties. Then click Run and enter the
+class name in the Main Class field. Alternatively, you can manually type the
+class name in the manifest Main-Class element.

scidetect/build.xml

+<?xml version="1.0" encoding="UTF-8"?>
+<!-- You may freely edit this file. See commented blocks below for -->
+<!-- some examples of how to customize the build. -->
+<!-- (If you delete it and reopen the project it will be recreated.) -->
+<!-- By default, only the Clean and Build commands use this build script. -->
+<!-- Commands such as Run, Debug, and Test only use this build script if -->
+<!-- the Compile on Save feature is turned off for the project. -->
+<!-- You can turn off the Compile on Save (or Deploy on Save) setting -->
+<!-- in the project's Project Properties dialog box.-->
+<project name="ScigenChecker_Local" default="default" basedir=".">
+    <description>Builds, tests, and runs the project ScigenChecker_Local.</description>
+    <import file="nbproject/build-impl.xml"/>
+    <!--
+
+    There exist several targets which are by default empty and which can be 
+    used for execution of your tasks. These targets are usually executed 
+    before and after some main targets. They are: 
+
+      -pre-init:                 called before initialization of project properties
+      -post-init:                called after initialization of project properties
+      -pre-compile:              called before javac compilation
+      -post-compile:             called after javac compilation
+      -pre-compile-single:       called before javac compilation of single file
+      -post-compile-single:      called after javac compilation of single file
+      -pre-compile-test:         called before javac compilation of JUnit tests
+      -post-compile-test:        called after javac compilation of JUnit tests
+      -pre-compile-test-single:  called before javac compilation of single JUnit test
+      -post-compile-test-single: called after javac compilation of single JUunit test
+      -pre-jar:                  called before JAR building
+      -post-jar:                 called after JAR building
+      -post-clean:               called after cleaning build products
+
+    (Targets beginning with '-' are not intended to be called on their own.)
+
+    Example of inserting an obfuscator after compilation could look like this:
+
+        <target name="-post-compile">
+            <obfuscate>
+                <fileset dir="${build.classes.dir}"/>
+            </obfuscate>
+        </target>
+
+    For list of available properties check the imported 
+    nbproject/build-impl.xml file. 
+
+
+    Another way to customize the build is by overriding existing main targets.
+    The targets of interest are: 
+
+      -init-macrodef-javac:     defines macro for javac compilation
+      -init-macrodef-junit:     defines macro for junit execution
+      -init-macrodef-debug:     defines macro for class debugging
+      -init-macrodef-java:      defines macro for class execution
+      -do-jar:                  JAR building
+      run:                      execution of project 
+      -javadoc-build:           Javadoc generation
+      test-report:              JUnit report generation
+
+    An example of overriding the target for project execution could look like this:
+
+        <target name="run" depends="ScigenChecker_Local-impl.jar">
+            <exec dir="bin" executable="launcher.exe">
+                <arg file="${dist.jar}"/>
+            </exec>
+        </target>
+
+    Notice that the overridden target depends on the jar target and not only on 
+    the compile target as the regular run target does. Again, for a list of available 
+    properties which you can use, check the target you are overriding in the
+    nbproject/build-impl.xml file. 
+
+    -->
+</project>

scidetect/build/built-jar.properties

+#Wed, 18 Feb 2015 15:00:41 +0100
+
+
+/home/tien/NetBeansProjects/ScigenChecker_Local=

scidetect/config.txt

+#this is a config file
+###############samples folder#################
+samples	data/samples
+#
+#
+#
+#
+###############Threshold configuration###########
+#this is an example of threshold configuration
+#threshold_Sci	0.48	0.56
+#you can set the desired level below
+#
+Threshold_Default	0.48	0.56
+Threshold_Scigen	0.48	0.56
+Threshold_Physgen	0.48	0.56
+Threshold_Mathgen	0.43	0.52
+Threshold_Propgen	0.48	0.56
+#
+#
+#
+###############path for log files###############
+Default_log_folder	logs/
+Default_detail_log_folder	detaillogs/
+#
+#
+#	
+###############max text length##################	
+#this is the max length in character (with spaces) for an article
+#if an article has more character than this length,
+#it wil be splited in to smaller part
+Max_length	30000

scidetect/data/samples/Mathgen/INDEX-mathgen0.txt

+	1
+FUNCTION	1
+DU	1
+DW	2
+GAUS	1
+GROUND	1
+MAJOR	5
+UZBEKISTANI	1
+MARKOV	2
+DN	2
+MONOID	3
+DP	1
+DE	4
+DD	1
+SMOOTHNESS	1
+DG	1
+DF	5
+DH	2
+DK	1
+DJ	1
+CONSTRUC	1
+BITRARY	1
+FUTURE	4
+CZECH	1
+LINEAR	6
+ARE	16
+EW	1
+HARRISS	1
+INVERTIBLE	1
+EV	1
+POTENTIAL	3
+FUNCTIONALS	1
+EY	1
+EZ	1
+GER	1