Add absuite module

common/absuite.scm

@@ -727,30 +727,6 @@
       "An Illumina Sample Sheet parsing library")
     (license license:expat)))
 
-(define-public python-nwalign3
-  (package
-    (name "python-nwalign3")
-    (version "0.1.2")
-    (source
-      (origin
-        (method url-fetch)
-        (uri (pypi-uri "nwalign3" version))
-        (sha256
-          (base32
-            "1gikp6dspg3fczlapzx25q3wlz6i909iz77146zcz0f1qz4zzqi2"))))
-    (build-system python-build-system)
-    (arguments
-     '(#:tests? #f))
-    (propagated-inputs
-      `(("python-cython" ,python-cython)
-        ("python-numpy" ,python-numpy)))
-    (home-page "https://github.com/briney/nwalign3")
-    (synopsis
-      "Needleman-Wunsch global sequence alignment")
-    (description
-      "Needleman-Wunsch global sequence alignment")
-    (license license:bsd-3)))
-
 (define-public python-ete3
   (package
     (name "python-ete3")
@@ -816,44 +792,3 @@
       "Utilities for analysis of antibody NGS data")
     (license #f)))
 
-(define-public python-abtools
-  (package
-    (name "python-abtools")
-    (version "0.1.10")
-    (source
-      (origin
-        (method url-fetch)
-        (uri (pypi-uri "abtools" version))
-        (sha256
-          (base32
-            "1344qqjqd5a6vh6540f1mdzy5ahv7sxqp1fkgvj60j661sw2hm8c"))))
-    (build-system python-build-system)
-    (arguments
-      '(#:tests? #f
-        #:phases
-       (modify-phases %standard-phases
-       (add-before 'build 'fix-old-pip-req
-       (lambda _
-       (substitute* "setup.py"
-       (("from pip.req import parse_requirements")
-        "from pip._internal.req import parse_requirements"))
-         #t)))))
-    (propagated-inputs
-      `(("python-biopython" ,python-biopython)
-        ("python-celery" ,python-celery)
-        ("python-ete3" ,python-ete3)
-        ("python-matplotlib" ,python-matplotlib)
-        ("python-nose" ,python-nose)
-        ("python-numpy" ,python-numpy)
-        ("python-nwalign" ,python-nwalign)
-        ("python-pandas" ,python-pandas)
-        ("python-pymongo" ,python-pymongo)
-        ("python-scikit-bio" ,python-scikit-bio)
-        ("python-seaborn" ,python-seaborn)))
-    (home-page
-      "https://www.github.com/briney/abtools")
-    (synopsis
-      "Utilities for analysis of antibody NGS data")
-    (description
-      "Utilities for analysis of antibody NGS data")
-    (license #f)))
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