Commit 07444fa0 authored by P-A Bouttier's avatar P-A Bouttier
Browse files

Add absuite module

parent c6908e2c
......@@ -727,30 +727,6 @@
"An Illumina Sample Sheet parsing library")
(license license:expat)))
(define-public python-nwalign3
(package
(name "python-nwalign3")
(version "0.1.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "nwalign3" version))
(sha256
(base32
"1gikp6dspg3fczlapzx25q3wlz6i909iz77146zcz0f1qz4zzqi2"))))
(build-system python-build-system)
(arguments
'(#:tests? #f))
(propagated-inputs
`(("python-cython" ,python-cython)
("python-numpy" ,python-numpy)))
(home-page "https://github.com/briney/nwalign3")
(synopsis
"Needleman-Wunsch global sequence alignment")
(description
"Needleman-Wunsch global sequence alignment")
(license license:bsd-3)))
(define-public python-ete3
(package
(name "python-ete3")
......@@ -816,44 +792,3 @@
"Utilities for analysis of antibody NGS data")
(license #f)))
(define-public python-abtools
(package
(name "python-abtools")
(version "0.1.10")
(source
(origin
(method url-fetch)
(uri (pypi-uri "abtools" version))
(sha256
(base32
"1344qqjqd5a6vh6540f1mdzy5ahv7sxqp1fkgvj60j661sw2hm8c"))))
(build-system python-build-system)
(arguments
'(#:tests? #f
#:phases
(modify-phases %standard-phases
(add-before 'build 'fix-old-pip-req
(lambda _
(substitute* "setup.py"
(("from pip.req import parse_requirements")
"from pip._internal.req import parse_requirements"))
#t)))))
(propagated-inputs
`(("python-biopython" ,python-biopython)
("python-celery" ,python-celery)
("python-ete3" ,python-ete3)
("python-matplotlib" ,python-matplotlib)
("python-nose" ,python-nose)
("python-numpy" ,python-numpy)
("python-nwalign" ,python-nwalign)
("python-pandas" ,python-pandas)
("python-pymongo" ,python-pymongo)
("python-scikit-bio" ,python-scikit-bio)
("python-seaborn" ,python-seaborn)))
(home-page
"https://www.github.com/briney/abtools")
(synopsis
"Utilities for analysis of antibody NGS data")
(description
"Utilities for analysis of antibody NGS data")
(license #f)))
\ No newline at end of file
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